View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2260_high_5 (Length: 295)

Name: NF2260_high_5
Description: NF2260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2260_high_5
NF2260_high_5
[»] chr5 (18 HSPs)
chr5 (7-214)||(792001-792210)
chr5 (49-205)||(25111067-25111222)
chr5 (49-205)||(25170158-25170313)
chr5 (49-205)||(25108607-25108762)
chr5 (49-205)||(25167699-25167854)
chr5 (82-214)||(13016314-13016446)
chr5 (82-214)||(13087692-13087824)
chr5 (83-206)||(5147447-5147571)
chr5 (54-188)||(6629318-6629449)
chr5 (59-205)||(4475280-4475424)
chr5 (82-214)||(31196344-31196477)
chr5 (110-214)||(15898216-15898321)
chr5 (110-214)||(39060932-39061037)
chr5 (82-141)||(15564843-15564903)
chr5 (84-214)||(35988659-35988789)
chr5 (108-205)||(32659850-32659947)
chr5 (83-204)||(42818938-42819060)
chr5 (108-184)||(4194987-4195064)
[»] chr7 (15 HSPs)
chr7 (47-214)||(37264338-37264504)
chr7 (83-202)||(29996979-29997099)
chr7 (73-214)||(32776008-32776150)
chr7 (85-214)||(2849280-2849409)
chr7 (85-214)||(27337824-27337955)
chr7 (84-205)||(33773995-33774116)
chr7 (83-214)||(32971968-32972100)
chr7 (82-188)||(47238268-47238375)
chr7 (83-202)||(23111039-23111159)
chr7 (99-205)||(10355701-10355808)
chr7 (151-205)||(30459096-30459150)
chr7 (85-205)||(45218111-45218231)
chr7 (84-132)||(8150066-8150114)
chr7 (87-182)||(36070162-36070257)
chr7 (119-214)||(38589759-38589855)
[»] chr4 (17 HSPs)
chr4 (47-212)||(5499347-5499509)
chr4 (49-132)||(41594764-41594847)
chr4 (86-205)||(38319945-38320065)
chr4 (79-205)||(38160099-38160225)
chr4 (47-176)||(22129004-22129131)
chr4 (49-205)||(25902378-25902535)
chr4 (85-205)||(49401690-49401810)
chr4 (77-205)||(46958756-46958882)
chr4 (49-205)||(47277596-47277755)
chr4 (83-205)||(20964238-20964361)
chr4 (83-188)||(28330845-28330951)
chr4 (84-205)||(20294049-20294170)
chr4 (83-205)||(42132847-42132972)
chr4 (82-132)||(49218732-49218782)
chr4 (84-205)||(53848680-53848802)
chr4 (129-214)||(35998114-35998199)
chr4 (87-205)||(25149485-25149604)
[»] chr2 (20 HSPs)
chr2 (78-214)||(4282963-4283101)
chr2 (83-205)||(314461-314584)
chr2 (73-188)||(12949905-12950020)
chr2 (83-214)||(6972491-6972622)
chr2 (109-205)||(44424241-44424336)
chr2 (86-133)||(5007194-5007241)
chr2 (83-205)||(7213509-7213631)
chr2 (129-184)||(43182327-43182382)
chr2 (129-205)||(4794607-4794683)
chr2 (83-205)||(9724912-9725034)
chr2 (82-205)||(41436113-41436235)
chr2 (78-214)||(38872867-38873002)
chr2 (85-205)||(18460522-18460642)
chr2 (84-205)||(28572242-28572362)
chr2 (82-200)||(928488-928606)
chr2 (78-136)||(5425962-5426020)
chr2 (148-202)||(44024755-44024809)
chr2 (85-205)||(24356145-24356265)
chr2 (86-205)||(13222102-13222222)
chr2 (98-205)||(43427052-43427159)
[»] chr1 (24 HSPs)
chr1 (84-205)||(37541065-37541187)
chr1 (83-205)||(26583762-26583885)
chr1 (84-214)||(21304760-21304889)
chr1 (82-214)||(26924070-26924203)
chr1 (73-184)||(50926802-50926914)
chr1 (83-214)||(24131353-24131483)
chr1 (82-214)||(29756092-29756225)
chr1 (83-205)||(10587533-10587655)
chr1 (93-214)||(27932794-27932916)
chr1 (108-205)||(37495863-37495959)
chr1 (48-205)||(29225321-29225482)
chr1 (85-184)||(31634249-31634346)
chr1 (85-214)||(27209921-27210050)
chr1 (86-214)||(705303-705432)
chr1 (109-205)||(2219425-2219522)
chr1 (128-205)||(45305887-45305963)
chr1 (85-184)||(36326159-36326258)
chr1 (129-176)||(46273223-46273270)
chr1 (135-214)||(52382390-52382469)
chr1 (87-205)||(2571397-2571514)
chr1 (83-188)||(3160638-3160744)
chr1 (135-205)||(5115829-5115899)
chr1 (121-205)||(35622769-35622853)
chr1 (121-205)||(29225787-29225870)
[»] chr3 (14 HSPs)
chr3 (108-214)||(54021433-54021540)
chr3 (86-205)||(51164986-51165105)
chr3 (83-214)||(1334732-1334863)
chr3 (78-183)||(36315680-36315784)
chr3 (87-205)||(39329705-39329823)
chr3 (87-205)||(42547061-42547179)
chr3 (121-214)||(29858854-29858947)
chr3 (109-205)||(41287296-41287393)
chr3 (85-205)||(53583513-53583633)
chr3 (87-205)||(9218179-9218297)
chr3 (73-205)||(30261444-30261574)
chr3 (78-205)||(3862119-3862245)
chr3 (86-214)||(46194160-46194288)
chr3 (78-205)||(44218980-44219106)
[»] scaffold0003 (1 HSPs)
scaffold0003 (84-205)||(352415-352534)
[»] chr8 (19 HSPs)
chr8 (83-214)||(14689985-14690117)
chr8 (78-176)||(36011939-36012037)
chr8 (87-205)||(2195502-2195620)
chr8 (83-205)||(25174535-25174658)
chr8 (82-214)||(45420888-45421021)
chr8 (49-141)||(15020867-15020957)
chr8 (76-214)||(11637165-11637304)
chr8 (95-205)||(40077713-40077823)
chr8 (79-205)||(42412330-42412456)
chr8 (85-214)||(29638326-29638455)
chr8 (83-184)||(32231336-32231438)
chr8 (82-188)||(1494197-1494304)
chr8 (47-125)||(8840442-8840519)
chr8 (86-188)||(26677124-26677227)
chr8 (85-205)||(28791342-28791462)
chr8 (82-205)||(886397-886521)
chr8 (120-188)||(26570141-26570208)
chr8 (129-205)||(38201389-38201464)
chr8 (137-205)||(41759635-41759703)
[»] chr6 (6 HSPs)
chr6 (82-205)||(34803654-34803780)
chr6 (84-214)||(15371815-15371945)
chr6 (108-211)||(3874025-3874129)
chr6 (83-133)||(15325253-15325303)
chr6 (76-205)||(31075868-31075997)
chr6 (136-214)||(33017948-33018026)
[»] scaffold0262 (1 HSPs)
scaffold0262 (47-206)||(12350-12510)
[»] scaffold0086 (1 HSPs)
scaffold0086 (86-214)||(5843-5969)
[»] scaffold0578 (1 HSPs)
scaffold0578 (86-133)||(4437-4484)
[»] scaffold0685 (1 HSPs)
scaffold0685 (119-214)||(6386-6482)
[»] scaffold0221 (1 HSPs)
scaffold0221 (113-214)||(10771-10873)
[»] scaffold0009 (1 HSPs)
scaffold0009 (136-214)||(220018-220096)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 792210 - 792001
Alignment:
Q  7 tatgttgggtcatgagagtttagacgatcattacatttacattacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaaca 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |    
T  792210 tatgttgggtcatgagagtttagacgatcattacatttacattacttcctctctcccattataagtgagcattttgctcatttcacatatattaagaata 792111  T
Q  107 tgtgtataagtaaaagagagagaaa-----ataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattg 201  Q
    ||||||||||||||||||| | |||     || ||||||| ||   |||| || ||||| |||||||||||||||||||||||||||||  |||||||||    
T  792110 tgtgtataagtaaaagagaaaaaaaaaaatatgattttgagtg---ttgttaagtattggtgcattcctctttattataaatgcaaaatagaatatattg 792014  T
Q  202 aattatgagtggt 214  Q
    |||||||||||||    
T  792013 aattatgagtggt 792001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 25111067 - 25111222
Alignment:
Q  49 tacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcat 148  Q
    |||| |||||||||||||||| | ||||||||||||||||||||| |||||||||| | | ||| |||| ||||||||| |||||| |||||| |||| |    
T  25111067 tactccctctgtcccattataagtgagcattttgctcatttcacacatattaagaaaaggagtaaaagtgaaagagaga-aaaatagttttgagtgtctt 25111165  T
Q  149 tgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    |||||| ||||| ||||||| ||||||| ||||||| ||| |  |||||||||||||    
T  25111166 tgtcaagtattgctgcattcttctttatcataaatgtaaagtagaatatattgaatt 25111222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 25170158 - 25170313
Alignment:
Q  49 tacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcat 148  Q
    |||| |||||||||||||||| | ||||||||||||||||||||| |||||||||| | | ||| |||| ||||||||| |||||| |||||| |||| |    
T  25170158 tactccctctgtcccattataagtgagcattttgctcatttcacacatattaagaaaaggagtaaaagtgaaagagaga-aaaatagttttgagtgtctt 25170256  T
Q  149 tgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    |||||| ||||| ||||||| ||||||| ||||||| ||| |  |||||||||||||    
T  25170257 tgtcaagtattgctgcattcttctttatcataaatgtaaagtagaatatattgaatt 25170313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 25108762 - 25108607
Alignment:
Q  49 tacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcat 148  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||| |||||||||| | | ||| |||| ||||||||| |||||| |||||| |||| |    
T  25108762 tactccctctgtcccattataagtgagcatttttctcatttcacacatattaagaaaaggagtaaaagtgaaagagaga-aaaatagttttgagtgtctt 25108664  T
Q  149 tgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    ||| || ||||| ||||||| ||||||| ||||||| ||| | ||||||||||||||    
T  25108663 tgttaagtattgctgcattcttctttatcataaatgtaaagtataatatattgaatt 25108607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 25167854 - 25167699
Alignment:
Q  49 tacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcat 148  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||| |||||||||| | | ||| |||| ||||||||| |||||| |||||| |||| |    
T  25167854 tactccctctgtcccattataagtgagcatttttctcatttcacacatattaagaaaaggagtaaaagtgaaagagaga-aaaatagttttgagtgtctt 25167756  T
Q  149 tgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    ||| || ||||| ||||||| ||||||| ||||||| ||| | ||||||||||||||    
T  25167755 tgttaagtattgctgcattcttctttatcataaatgtaaagtataatatattgaatt 25167699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 13016314 - 13016446
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattata 180  Q
    ||||||||||||  ||||||||| | ||||| |||| |||||||||| ||||| | ||||| |||| || |||| ||||| |||||| |||||||| |||    
T  13016314 gctcatttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttgagtgtccttatcaactattggtgcatt-ctctttatcata 13016412  T
Q  181 aatgcaaaatgtaatatattgaattatgagtggt 214  Q
    |||||||| |  |||||||||||||  |||||||    
T  13016413 aatgcaaagtagaatatattgaattgggagtggt 13016446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 13087692 - 13087824
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattata 180  Q
    ||||||||||||  ||||||||| | ||||| |||| |||||||||| ||||| | ||||| |||| || |||| ||||| |||||| |||||||| |||    
T  13087692 gctcatttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttgagtgtccttatcaactattggtgcatt-ctctttatcata 13087790  T
Q  181 aatgcaaaatgtaatatattgaattatgagtggt 214  Q
    |||||||| |  |||||||||||||  |||||||    
T  13087791 aatgcaaagtagaatatattgaattgagagtggt 13087824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 5147447 - 5147571
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||  ||||||||| |  | ||||||| ||||| |||||||| | ||||||| |||| || |||| ||||| ||||||| ||||||| ||||    
T  5147447 ctcatttcacacttattaagaaaaaatatataagtgaaagaaagagaaaaatgattttgagtgtccttatcaactattggtgcattcttctttatcataa 5147546  T
Q  182 atgcaaaatgtaatatattgaatta 206  Q
    ||||||| |  ||||||||||||||    
T  5147547 atgcaaagtagaatatattgaatta 5147571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 188
Target Start/End: Original strand, 6629318 - 6629449
Alignment:
Q  54 cctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtca 153  Q
    |||| |||||||| |||  |||| ||||  || ||||||| |||||||||| | |||||||| | |||||||||  ||||| |||||| |||| ||||||    
T  6629318 cctccgtcccattttatctgagcctttttttcttttcacacatattaagaaaaagtgtataaatgaaagagaga--aaatagttttgagtgtc-ttgtca 6629414  T
Q  154 aatattgatgcattcctctttattataaatgcaaa 188  Q
    | ||||| ||||||| | |||||||||||||||||    
T  6629415 agtattggtgcattcttttttattataaatgcaaa 6629449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 205
Target Start/End: Complemental strand, 4475424 - 4475280
Alignment:
Q  59 gtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatat 158  Q
    ||||||| ||| | |||||||||| ||||| |||| |||||||||| | |||||||||| ||||| |||||||| | | |||| |||| ||||||| |||    
T  4475424 gtcccataataagtgagcattttgttcattgcacacatattaagaaaa-gtgtataagtgaaagaaagagaaaa-attgttgagtgtccttgtcaagtat 4475327  T
Q  159 tgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    || |||||||  | |||| ||||||||||| || || || |||||||    
T  4475326 tggtgcattcaccattatcataaatgcaaagtggaaaatgttgaatt 4475280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 31196477 - 31196344
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattata 180  Q
    ||||||||||||  ||||||||| || ||||||| | ||||||| |||||| || |||||| |||| ||||||  ||||| ||||||  |||||||||||    
T  31196477 gctcatttcacacttattaagaaaatatgtataaatgaaagagatagaaaaatagttttgagtgtccttgtcatttattgctgcatttttctttattata 31196378  T
Q  181 aatgcaaaatgtaatatattgaattatgagtggt 214  Q
     ||||||| |  ||||||||| |||  |||||||    
T  31196377 catgcaaagtagaatatattggattgagagtggt 31196344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 214
Target Start/End: Complemental strand, 15898321 - 15898216
Alignment:
Q  110 gtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaattatg 208  Q
    |||||||| |||||||||||||| | | ||| | |||| || | || ||||||||||||| ||||||| ||||||||||| |  |||||||||||||  |    
T  15898321 gtataagtgaaagagagagaaaaatgagtttaagtgtccttattaactattgatgcattcttctttatcataaatgcaaagtagaatatattgaattgag 15898222  T
Q  209 agtggt 214  Q
    ||||||    
T  15898221 agtggt 15898216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 39060932 - 39061037
Alignment:
Q  110 gtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaattatg 208  Q
    |||||||| |||||||||||||| | | ||||| |||| |||||||  | |  ||||||| ||||||| ||||||||||| |  |||||||||||||| |    
T  39060932 gtataagtgaaagagagagaaaaatgagtttgagtgtccttgtcaaccactagtgcattcttctttatcataaatgcaaagtagaatatattgaattagg 39061031  T
Q  209 agtggt 214  Q
    ||||||    
T  39061032 agtggt 39061037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 15564843 - 15564903
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttga 141  Q
    ||||||||||||  ||||||||| | |||||||||| |||||||||| |||||||||||||    
T  15564843 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaataattttga 15564903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 35988789 - 35988659
Alignment:
Q  84 tcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaa 182  Q
    ||||||||||||||||||||| |  | ||||||| ||| |||||||||| || |||| | |||  ||||||| ||||| ||||||| |  |||| |||||    
T  35988789 tcatttcacatatattaagaaaaaatttataagtgaaacagagagaaaaatagttttaagtgtg-ttgtcaagtattggtgcattcattcttatcataaa 35988691  T
Q  183 tgcaaaatgtaatatattgaattatgagtggt 214  Q
    |||||| |  |||||||||||||  |||||||    
T  35988690 tgcaaagttgaatatattgaattgggagtggt 35988659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 32659947 - 32659850
Alignment:
Q  108 gtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    |||||||| | ||||||| |||||| | ||||||| |||| |||| |||| || ||||||| ||  |||||||||||||||| | ||||||||||||||    
T  32659947 gtgtataaatgaaagagaaagaaaaatgattttgagtgtc-ttgttaaatgtttatgcatttcttattattataaatgcaaagtataatatattgaatt 32659850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 42819060 - 42818938
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||  ||||||||| | |||||||||||||||||| || |||||  |||||| || | || | ||  |||| ||||||| ||||||| ||||    
T  42819060 ctcatttcacacttattaagaaaaagtgtataagtaaaagagaaagaaaaatggttttgagtgcccttattaatcattggtgcattcttctttatcataa 42818961  T
Q  182 atgcaaaatgtaatatattgaat 204  Q
    ||| ||| |  ||||||||||||    
T  42818960 atgtaaagtagaatatattgaat 42818938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 4195064 - 4194987
Alignment:
Q  108 gtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatg 184  Q
    ||||||||||||||||||||||||| |  |||||| || | || | || ||||||||||||| ||||||| |||||||    
T  4195064 gtgtataagtaaaagagagagaaaaatggttttgagtgcccttatgaactattgatgcattcttctttatcataaatg 4194987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 47 - 214
Target Start/End: Complemental strand, 37264504 - 37264338
Alignment:
Q  47 attacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtc 146  Q
    |||||| |||| |||||||| || | |||| |||||||||||||||| |||||||||| | || ||||||| ||||||||| |||||  |||||| || |    
T  37264504 attactccctccgtcccattttaagtgagccttttgctcatttcacacatattaagaaaaagtatataagtgaaagagaga-aaaatggttttgagtgcc 37264406  T
Q  147 attgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaattatgagtggt 214  Q
     ||||||| |||||||||||| |||||||| ||||||||||| |  |||||||||||||  |||||||    
T  37264405 cttgtcaagtattgatgcattgctctttatcataaatgcaaagtagaatatattgaattgggagtggt 37264338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 29996979 - 29997099
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||  ||||||||| | |||||||||| ||||||| |||||| |  ||||||||||| |||| || ||||| ||||||| ||||||| ||||    
T  29996979 ctcatttcacacttattaagaaaaagtgtataagtgaaagagaaagaaaaatggttttgaatgtccttgttaattattggtgcattcttctttatcataa 29997078  T
Q  182 atgcaaaatgtaatatattga 202  Q
    ||||||| | |||||||||||    
T  29997079 atgcaaagtataatatattga 29997099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 32776150 - 32776008
Alignment:
Q  73 gagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctc 171  Q
    |||| |||||||||||||||| |||||||||| | |||||||||| || ||||||| |||||  |||||| || | |||| || ||||| ||||||| ||    
T  32776150 gagccttttgctcatttcacacatattaagaaaaagtgtataagtgaaggagagagaaaaatggttttgagtgcctttgttaagtattggtgcattcttc 32776051  T
Q  172 tttattataaatgcaaaatgtaatatattgaattatgagtggt 214  Q
    ||||| ||||||| ||| |  |||||||||||||  |||||||    
T  32776050 tttatcataaatgtaaagtagaatatattgaattgggagtggt 32776008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 2849409 - 2849280
Alignment:
Q  85 catttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    ||||||||| |||||||||| |  ||||||| | |||||||||||||| || |||||  |||| ||||||| ||||| ||||||| ||||||| ||||||    
T  2849409 catttcacacatattaagaaaaa-tgtataaatgaaagagagagaaaaatagttttgcgtgtctttgtcaagtattggtgcattcttctttatcataaat 2849311  T
Q  184 gcaaaatgtaatatattgaattatgagtggt 214  Q
    | ||| |  |||||||||||||  |||||||    
T  2849310 gtaaagtagaatatattgaattgagagtggt 2849280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 27337824 - 27337955
Alignment:
Q  85 catttcacatatattaagaacatgtgtataagtaaaagagagaga---aaataattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||  ||||||| | |||||||| ||||||||||| |   ||||| |||||| |||| ||||||| ||||| ||||||  ||||||| ||||    
T  27337824 catttcacataggttaagaaaa-gtgtataaataaaagagagaaagagaaatagttttgagtgtctttgtcaagtattggtgcattattctttatcataa 27337922  T
Q  182 atgcaaaatgtaatatattgaattatgagtggt 214  Q
    ||| ||| | ||||||||||||||  |||||||    
T  27337923 atgtaaagtataatatattgaattgggagtggt 27337955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 33773995 - 33774116
Alignment:
Q  84 tcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaa 182  Q
    ||||||||||||||||||||| | |||||||||| |||||||||| |||||| |||||| |||| |||| || |||||||| ||||  |  ||| ||| |    
T  33773995 tcatttcacatatattaagaaaaagtgtataagtgaaagagagagaaaaatagttttgagtgtc-ttgttaagtattgatgtattctccactatcataga 33774093  T
Q  183 tgcaaaatgtaatatattgaatt 205  Q
    |||||| || |||||| ||||||    
T  33774094 tgcaaagtggaatatactgaatt 33774116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 32971968 - 32972100
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||  ||||||||| |  ||||||||| |||||||||| |||||  |||||| || | || |||| ||||| ||||||| | ||| | ||||    
T  32971968 ctcatttcacacttattaagaaaaaatgtataagtgaaagagagagaaaaatggttttgagtgcccttatcaactattggtgcattcttttttgtcataa 32972067  T
Q  182 atgcaaaatgtaatatattgaattatgagtggt 214  Q
    ||||||| |  ||||||||||||| ||||||||    
T  32972068 atgcaaagtagaatatattgaattgtgagtggt 32972100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 47238375 - 47238268
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattata 180  Q
    ||||||||||||  ||||||||| | |||||||||| |||||||||| |||||  |||||| || | || ||||  |||| ||||||| ||||||| |||    
T  47238375 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttgagtgcccttatcaacaattggtgcattcttctttatcata 47238276  T
Q  181 aatgcaaa 188  Q
    ||||||||    
T  47238275 aatgcaaa 47238268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 23111039 - 23111159
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    ||||||||| |  ||||||||| |  ||||||| | ||| |||||||||| | |||||||||||| || |||| ||||| ||||||| ||||||| ||||    
T  23111039 ctcatttcatacttattaagaaaaaatgtataaatgaaatagagagaaaaatgattttgaatgtctttatcaactattggtgcattcttctttatcataa 23111138  T
Q  182 atgcaaaatgtaatatattga 202  Q
    ||| ||| |  ||||||||||    
T  23111139 atgtaaagtagaatatattga 23111159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 10355701 - 10355808
Alignment:
Q  99 taagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatat 197  Q
    |||||| | ||||||||||  |||||||| |||| |  |||||| |||| || |||| ||||| |||||| |||||||| ||||||||||| |  |||||    
T  10355701 taagaaaaagtgtataagtgtaagagagaaaaaaatggttttgagtgtccttatcaactattggtgcatttctctttatcataaatgcaaagtagaatat 10355800  T
Q  198 attgaatt 205  Q
    ||||||||    
T  10355801 attgaatt 10355808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 30459150 - 30459096
Alignment:
Q  151 tcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    |||||||||||||||||  ||||||| ||||||| |||||  |||||||||||||    
T  30459150 tcaaatattgatgcattattctttataataaatgtaaaatagaatatattgaatt 30459096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 45218111 - 45218231
Alignment:
Q  85 catttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    ||||||||| | |||||||| | ||||||||   |||||||||||||| || |||||| || | || |||| ||||| ||||||| ||||||| ||||||    
T  45218111 catttcacacaaattaagaaaa-gtgtataaaggaaagagagagaaaaatagttttgagtgcctttttcaagtattggtgcattcttctttatcataaat 45218209  T
Q  184 gcaaaatgtaatatattgaatt 205  Q
    | ||| |  |||||||||||||    
T  45218210 gtaaagtagaatatattgaatt 45218231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 8150114 - 8150066
Alignment:
Q  84 tcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa 132  Q
    |||||||||| |||||||||| |  ||||||||| ||||||||||||||    
T  8150114 tcatttcacacatattaagaaaaaatgtataagtgaaagagagagaaaa 8150066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 36070257 - 36070162
Alignment:
Q  87 tttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaa 182  Q
    ||||||||| |||||||| |  ||||||| | |||||||||| |||||  |||||| |||| ||||||||||||| ||||||  ||||||| |||||    
T  36070257 tttcacatagattaagaaaaa-tgtataaatgaaagagagaggaaaatggttttgagtgtctttgtcaaatattggtgcattattctttatcataaa 36070162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 38589855 - 38589759
Alignment:
Q  119 aaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaattatgagtggt 214  Q
    |||||||||||||| |  ||||||||| | || |||| ||||| ||||||| ||||||| ||||||| ||| |  |||||||||||||  |||||||    
T  38589855 aaagagagagaaaaatggttttgaatgcccttatcaactattggtgcattcttctttatcataaatgtaaagtagaatatattgaattgggagtggt 38589759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 5499347 - 5499509
Alignment:
Q  47 attacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgt 145  Q
    |||||| |||| |||||||| ||  ||||| ||||| |||||| ||| |||||||||| | |||||||||| ||||||| |||||| || |||||| |||    
T  5499347 attactccctccgtcccattttaaccgagccttttgttcatttgacacatattaagaaaaagtgtataagtgaaagagaaagaaaaatagttttgagtgt 5499446  T
Q  146 cattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaattatgagtg 212  Q
        |||||||||||||||||||||  |||| ||| |||||||||  |||||||||||||| |||||    
T  5499447 ----gtcaaatattgatgcattccttcttatcatagatgcaaaatagaatatattgaattaggagtg 5499509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 41594764 - 41594847
Alignment:
Q  49 tacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa 132  Q
    |||| |||| ||||||||||| |||||| ||||| |||||||||||||||| |||| | |||| ||||| ||||||||||||||    
T  41594764 tactccctccgtcccattataagcgagccttttgttcatttcacatatattgagaaaaagtgtttaagtgaaagagagagaaaa 41594847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 38320065 - 38319945
Alignment:
Q  86 atttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatg 184  Q
    ||||||||| ||||||||| | |||||||||| |||||||||||||| |   ||||| || | || |||| ||||| ||||||| ||||||| |||||||    
T  38320065 atttcacatttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttatcaactattggtgcattcttctttatcataaatg 38319966  T
Q  185 caaaatgtaatatattgaatt 205  Q
    |||| |  |||||||||||||    
T  38319965 caaagtagaatatattgaatt 38319945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 38160099 - 38160225
Alignment:
Q  79 tttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttatt 177  Q
    ||||||||||| | |||||||||||| |  ||||||| |||| ||||||||||| |  |||| | |||| |||||||||||||||||||||  | ||||     
T  38160099 tttgctcattttatatatattaagaaaaa-tgtataaataaaggagagagaaaaattgttttaagtgtctttgtcaaatattgatgcattctccattatc 38160197  T
Q  178 ataaatgcaaaatgtaatatattgaatt 205  Q
    |||||| |||| || |||||||||||||    
T  38160198 ataaatacaaagtgaaatatattgaatt 38160225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 22129004 - 22129131
Alignment:
Q  47 attacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaaca-tgtgtataagtaaaagagagagaaaataattttgaatgt 145  Q
    |||||||||||||||||| | ||  ||||| ||||| |||||||||| |||||||||| | ||| || ||||||||||||||| |||| ||||||| | |    
T  22129004 attacttcctctgtcccactttaaacgagc-ttttgttcatttcacacatattaagaaaattgtatacaagtaaaagagagag-aaatgattttgagtat 22129101  T
Q  146 cattgtcaaatattgatgcattcctctttat 176  Q
    | ||||||| ||||| |||||||||| ||||    
T  22129102 c-ttgtcaactattggtgcattcctccttat 22129131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 25902378 - 25902535
Alignment:
Q  49 tacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtca 147  Q
    ||||||||| ||||||| |||   ||||||||| ||||||||||| |||||||||| | |||||||||| ||||||  || |||||  |||||| |||      
T  25902378 tacttcctccgtcccataataactgagcattttcctcatttcacacatattaagaaaaagtgtataagtgaaagaggaagtaaaatggttttgagtgttt 25902477  T
Q  148 ttgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    |||| || ||||  ||||||| ||||| ||||||||  ||| |  |||||||||||||    
T  25902478 ttgttaagtattagtgcattcttctttgttataaatataaagttgaatatattgaatt 25902535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 49401810 - 49401690
Alignment:
Q  85 catttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    ||||||||||| |||||||| |  |||||||   |||||||||||||| || ||||||||||| || |||| ||||||| ||||  ||||||||||||||    
T  49401810 catttcacatagattaagaaaaa-tgtataaagtaaagagagagaaaaatagttttgaatgtccttttcaagtattgatacattgttctttattataaat 49401712  T
Q  184 gcaaaatgtaatatattgaatt 205  Q
    | ||| |  |||||||||||||    
T  49401711 gtaaagtagaatatattgaatt 49401690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 46958882 - 46958756
Alignment:
Q  77 attttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttat 176  Q
    |||||| |||||||||| |||||||||| | |||||||||| ||||| ||||||| || |||||| |||| |||| || ||| | |||||||||  ||||    
T  46958882 attttgttcatttcacacatattaagaaaaagtgtataagtgaaagatagagaaa-tagttttgagtgtc-ttgttaagtatcggtgcattccttcttat 46958785  T
Q  177 tataaatgcaaaatgtaatatattgaatt 205  Q
     ||||| ||||| |  |||||||||||||    
T  46958784 cataaacgcaaagtagaatatattgaatt 46958756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 47277596 - 47277755
Alignment:
Q  49 tacttcctctgtcccattatat--gcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagaga-gaaaataattttgaatgt 145  Q
    |||| |||| ||||||||||||  | |||| |||||||||||||||| |||||||||| |  ||||||||||||||| |||  |||||| |||| ||||     
T  47277596 tactccctccgtcccattatataagtgagccttttgctcatttcacacatattaagaaaaaatgtataagtaaaagatagataaaaatatttttcaatgc 47277695  T
Q  146 cattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    | ||||||  ||||  | ||||  ||||||| ||||||| ||| |  |||||||||||||    
T  47277696 ccttgtcaggtatttgtacatttttctttatcataaatgtaaagtaaaatatattgaatt 47277755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 20964238 - 20964361
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||  ||||||||| | |||||||||| |||||||||| ||||| | ||||  |||| || |||| ||||| ||||||| |||||||  |||    
T  20964238 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgagtttgcgtgtctttatcaactattggtgcattcttctttatcgtaa 20964337  T
Q  182 atgcaaaatgtaatatattgaatt 205  Q
    ||||||| |  ||||||| |||||    
T  20964338 atgcaaagtagaatatatcgaatt 20964361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 28330951 - 28330845
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||  ||||||||| | |||||||||| |||||||||||||| |   ||||| || | || |||| ||||| ||||||| ||||||| ||||    
T  28330951 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttatcaactattggtgcattcttctttatcataa 28330852  T
Q  182 atgcaaa 188  Q
    |||||||    
T  28330851 atgcaaa 28330845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 20294170 - 20294049
Alignment:
Q  84 tcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaa 182  Q
    ||||||||||| ||||||||| | |||  ||| |||||||||||||||| | |||| || ||| ||  |||| |||||||||||| ||||| || ||| |    
T  20294170 tcatttcacatgtattaagaaaaagtgagtaaataaaagagagagaaaaatgatttggagtgttata-tcaagtattgatgcatttctcttcatcataca 20294072  T
Q  183 tgcaaaatgtaatatattgaatt 205  Q
    | |||| | ||||||||||||||    
T  20294071 tacaaagtataatatattgaatt 20294049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 42132972 - 42132847
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgt--cattgtcaaatattgatgcattcctctttattat 179  Q
    |||||||||||  ||||||||| | |||||||||| |||||||||||||| |   ||||| ||   | || | || ||||||||||||| ||||||| ||    
T  42132972 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcgcccttataaactattgatgcattcttctttatcat 42132873  T
Q  180 aaatgcaaaatgtaatatattgaatt 205  Q
    ||||||||| |  |||||||||||||    
T  42132872 aaatgcaaagtagaatatattgaatt 42132847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 49218732 - 49218782
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa 132  Q
    ||||||||||||  ||||||||| | |||||||||| ||||||||||||||    
T  49218732 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaa 49218782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 53848802 - 53848680
Alignment:
Q  84 tcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaa 182  Q
    ||||||||| | ||||||||| | ||||||||||  |||||||| |||| | ||||||| || | || |||| ||||| ||||||  | ||||| |||||    
T  53848802 tcatttcacgtttattaagaaaaagtgtataagtgtaagagagaaaaaaatgattttgagtgcccttatcaactattggtgcattattatttatcataaa 53848703  T
Q  183 tgcaaaatgtaatatattgaatt 205  Q
    |||||| |  |||||||||||||    
T  53848702 tgcaaagtagaatatattgaatt 53848680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 35998114 - 35998199
Alignment:
Q  129 aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaattatgagtggt 214  Q
    ||||||||||||| |||| || |||| ||||| | ||||| ||||||| ||||||| ||| |  |||||||||||||  |||||||    
T  35998114 aaaataattttgagtgtctttatcaagtattggtacattcttctttatcataaatgtaaagtaaaatatattgaattgagagtggt 35998199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 25149604 - 25149485
Alignment:
Q  87 tttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctcttt-attataaatg 184  Q
    ||||||| | |||||||| | ||||||||  ||||||||||||||| || |||||| || | || | || ||||| ||||||||||||| || |||||||    
T  25149604 tttcacacagattaagaaaa-gtgtataacgaaaagagagagaaaaatagttttgagtgccttttttaagtattggtgcattcctcttttatcataaatg 25149506  T
Q  185 caaaatgtaatatattgaatt 205  Q
     ||| || |||||||||||||    
T  25149505 taaagtggaatatattgaatt 25149485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 4282963 - 4283101
Alignment:
Q  78 ttttgctcatttcacatatattaagaacat-gtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctcttta 175  Q
    |||||||||||| || | ||||||||| |  ||||||||||||||||||||||||| |  ||||||||| | || |||| ||||| ||||||||||||||    
T  4282963 ttttgctcattttacgtttattaagaaaaaagtgtataagtaaaagagagagaaaaatggttttgaatgcccttatcaagtattggtgcattcctcttta 4283062  T
Q  176 ttataaatgcaaaatgtaatatattgaattatgagtggt 214  Q
    | ||||||| |||||  |||||||||||||  |||||||    
T  4283063 tcataaatgtaaaatagaatatattgaattgagagtggt 4283101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 314584 - 314461
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||  ||||||||| | |||||||||| |||||||||| |||||  |||||| || | || |||| ||||||||||||| ||||||| ||||    
T  314584 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagaggaaaatggttttgagtgcccttatcaactattgatgcattcttctttatcataa 314485  T
Q  182 atgcaaaatgtaatatattgaatt 205  Q
    ||||||| |  |||||||||||||    
T  314484 atgcaaagtagaatatattgaatt 314461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 12949905 - 12950020
Alignment:
Q  73 gagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagag-agaaaataattttgaatgtcattgtcaaatattgatgcattcctc 171  Q
    |||| ||||| ||||||||||||||||| ||| |  ||||||||| |||||||| | ||||||||||||| |||| ||||||| ||||| || ||||||     
T  12949905 gagccttttgttcatttcacatatattacgaaaaaatgtataagtgaaagagagaaaaaaataattttgagtgtc-ttgtcaagtattggtgaattcctt 12950003  T
Q  172 tttattataaatgcaaa 188  Q
    ||||| |||||||||||    
T  12950004 tttatcataaatgcaaa 12950020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 6972491 - 6972622
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaa 182  Q
    |||||||||||  ||||||||| |  ||||||||| |||||||||||||||  |||||| || | || |||| ||||  ||||||| ||||||| |||||    
T  6972491 ctcatttcacacttattaagaaaaaatgtataagtgaaagagagagaaaatggttttgagtgcccttatcaactatttgtgcattcttctttatcataaa 6972590  T
Q  183 tgcaaaatgtaatatattgaattatgagtggt 214  Q
    |||||| |  |||||||||||||  |||||||    
T  6972591 tgcaaagtagaatatattgaattgagagtggt 6972622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 44424241 - 44424336
Alignment:
Q  109 tgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    ||||||||| |||||||||||||||  ||||||||||| ||||||| ||||||||||||  |  |||| ||||||||||| |  |||||||||||||    
T  44424241 tgtataagtgaaagagagagaaaatggttttgaatgtc-ttgtcaagtattgatgcattttttattatcataaatgcaaagttgaatatattgaatt 44424336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 5007194 - 5007241
Alignment:
Q  86 atttcacatatattaagaacatgtgtataagtaaaagagagagaaaat 133  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  5007194 atttcacacatattaagaaaatgtgtataagtaaaagagagagaaaat 5007241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 7213631 - 7213509
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    ||||||||||| | |||||||| |  ||||||| | ||| |||||||||| | ||||||| || | || |||||||||| ||||||| ||||||||||||    
T  7213631 ctcatttcacacagattaagaaaaa-tgtataaatgaaatagagagaaaaatgattttgagtgcctttatcaaatattggtgcattcttctttattataa 7213533  T
Q  182 atgcaaaatgtaatatattgaatt 205  Q
    ||| ||| || |||||||||||||    
T  7213532 atgtaaagtggaatatattgaatt 7213509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 43182382 - 43182327
Alignment:
Q  129 aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatg 184  Q
    ||||||||||||| |||| ||||||||||||| ||||||| |||||||||||||||    
T  43182382 aaaataattttgagtgtctttgtcaaatattggtgcattcttctttattataaatg 43182327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 4794683 - 4794607
Alignment:
Q  129 aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    ||||||||||||| |||  ||||||||||||||||||||  |  |||| ||||||||||| || |||||||||||||    
T  4794683 aaaataattttgagtgttcttgtcaaatattgatgcattttttattatcataaatgcaaagtggaatatattgaatt 4794607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 9725034 - 9724912
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagaga-aaataattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    ||||||||||| |||||||||| | |||||||| | ||||||||||| |||| ||||||| ||   || |||| ||||| ||||||| ||||||| ||||    
T  9725034 ctcatttcacacatattaagaaaa-gtgtataaatgaaagagagagagaaatgattttgagtgcttttatcaagtattggtgcattcttctttatcataa 9724936  T
Q  182 atgcaaaatgtaatatattgaatt 205  Q
    ||| ||| |  |||||||||||||    
T  9724935 atgtaaagtagaatatattgaatt 9724912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 41436235 - 41436113
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||| |||||||||| |  ||||||| | ||  ||||||||||||||||| | |||  |||| || |||||||| |||| ||  ||| ||||    
T  41436235 gctcatttcacacatattaagaaaaa-tgtataaatgaattagagagaaaataattttaagtgtttttgttaagtattgatgtattcttcactatcataa 41436137  T
Q  182 atgcaaaatgtaatatattgaatt 205  Q
    ||||||| || |||||||||||||    
T  41436136 atgcaaagtggaatatattgaatt 41436113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 38872867 - 38873002
Alignment:
Q  78 ttttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttat 176  Q
    |||||||||||||| |  ||||||||| | ||||| ||||  |||||| | |||| |  |||||| |||| || |||| |||||||||||||||||||||    
T  38872867 ttttgctcatttcatacttattaagaaaaagtgtaaaagtggaagagaaaaaaaaatggttttgagtgtccttatcaactattgatgcattcctctttat 38872966  T
Q  177 tataaatgcaaaatgtaatatattgaattatgagtggt 214  Q
     ||||||  | || |||||||||||||||  |||||||    
T  38872967 cataaat--ataaagtaatatattgaattgggagtggt 38873002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 18460642 - 18460522
Alignment:
Q  85 catttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    ||||||||| | |||||||| | |||||||| | ||||||| |||||| | ||||||| |||| ||||||||||||| | ||||| ||||| | ||||||    
T  18460642 catttcacacagattaagaaaa-gtgtataaatgaaagagatagaaaaatgattttgagtgtctttgtcaaatattggtacattcttctttgtcataaat 18460544  T
Q  184 gcaaaatgtaatatattgaatt 205  Q
    | ||| |  |||||||||||||    
T  18460543 gtaaagtagaatatattgaatt 18460522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 28572362 - 28572242
Alignment:
Q  84 tcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    |||||||||| ||||||||| ||  ||||||| |||| |||||||||||| ||||| | ||   |||| || ||||| |||||||  |  ||| ||||||    
T  28572362 tcatttcacacatattaaga-caaatgtataaataaaggagagagaaaatgattttaagtgctcttgttaagtattggtgcattctccactatcataaat 28572264  T
Q  184 gcaaaatgtaatatattgaatt 205  Q
    |||||||| |||||||||||||    
T  28572263 gcaaaatgaaatatattgaatt 28572242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 928488 - 928606
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    ||||||||||||  ||||||||| |   |||||||| ||||||| | |||||   ||||| || | || |||| ||||| ||||||| ||||||| ||||    
T  928488 gctcatttcacacttattaagaaaaaacgtataagtgaaagagaaaaaaaatgggtttgagtgcctttatcaactattggtgcattcttctttatcataa 928587  T
Q  182 atgcaaaatgtaatatatt 200  Q
    |||||||||  ||||||||    
T  928588 atgcaaaatagaatatatt 928606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 5426020 - 5425962
Alignment:
Q  78 ttttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataat 136  Q
    ||||| ||||||||||  ||||||||| | |||||||||| ||||||||||| ||||||    
T  5426020 ttttgttcatttcacacgtattaagaaaaagtgtataagtgaaagagagagagaataat 5425962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 44024809 - 44024755
Alignment:
Q  148 ttgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattga 202  Q
    |||||||||||||||||||| ||| |||| ||||||||||| |  ||||||||||    
T  44024809 ttgtcaaatattgatgcatttctcattatcataaatgcaaagtagaatatattga 44024755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 24356265 - 24356145
Alignment:
Q  85 catttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    ||||||||| | |||||||| | ||||||||   |||||||||||||| || |||||| || | || |||| ||||||||||||| ||||||| ||||||    
T  24356265 catttcacacagattaagaaaa-gtgtataaaggaaagagagagaaaactagttttgagtgcctttttcaagtattgatgcattcttctttatcataaat 24356167  T
Q  184 gcaaaatgtaatatattgaatt 205  Q
    | ||| |  ||||| |||||||    
T  24356166 gtaaagtagaatatgttgaatt 24356145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 13222222 - 13222102
Alignment:
Q  86 atttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatg 184  Q
    ||||||||  ||||||||| |  ||||||||| |||||||||||||| |   ||||| || | || |||| ||||| || |||| ||||||| |||||||    
T  13222222 atttcacacttattaagaaaaaatgtataagtgaaagagagagaaaaatgggtttgagtgcccttatcaactattggtgtattcttctttatcataaatg 13222123  T
Q  185 caaaatgtaatatattgaatt 205  Q
    |||| |  |||||||||||||    
T  13222122 caaagtaaaatatattgaatt 13222102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 205
Target Start/End: Original strand, 43427052 - 43427159
Alignment:
Q  98 ttaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaa-tattgatgcattcctctttattataaatgcaaaatgtaata 196  Q
    ||||||| | |||||||| | ||||||||| ||||||  ||||| || | |||| ||| ||||  ||||||| ||||||| |||||||||||||  ||||    
T  43427052 ttaagaaaaagtgtataaatgaaagagaga-aaaataggtttgagtgcccttgtgaaactattagtgcattcttctttatcataaatgcaaaatagaata 43427150  T
Q  197 tattgaatt 205  Q
    |||||||||    
T  43427151 tattgaatt 43427159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 37541065 - 37541187
Alignment:
Q  84 tcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaa 182  Q
    ||||||||||  ||||||||| | |||||||||| |||||||||||||| |  ||||||||||| || |||| ||||| ||||||| |||||||||||||    
T  37541065 tcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttgaatgtctttatcaactattggtgcattcttctttattataaa 37541164  T
Q  183 tgcaaaatgtaatatattgaatt 205  Q
    || ||| |  |||||||||||||    
T  37541165 tgtaaagtagaatatattgaatt 37541187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 26583885 - 26583762
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||  ||||||||| | |||||||||| |||||||||||||| | | ||||| || | || |||| ||||| ||||||| ||||||| ||||    
T  26583885 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgagtttgagtgcctttatcaactattggtgcattcttctttatcataa 26583786  T
Q  182 atgcaaaatgtaatatattgaatt 205  Q
    |||||||||  |||||||||||||    
T  26583785 atgcaaaatagaatatattgaatt 26583762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 84 - 214
Target Start/End: Original strand, 21304760 - 21304889
Alignment:
Q  84 tcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    |||||||||||| |||||||| |  ||||||| | ||||||||| |||||  |||||| |||| ||||||| ||||||||||||  ||||||| ||||||    
T  21304760 tcatttcacataaattaagaaaaa-tgtataaatgaaagagagataaaattgttttgagtgtctttgtcaagtattgatgcatttttctttatcataaat 21304858  T
Q  184 gcaaaatgtaatatattgaattatgagtggt 214  Q
      ||| | ||||||||||||||| |||||||    
T  21304859 ataaagtataatatattgaattaagagtggt 21304889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 26924070 - 26924203
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattata 180  Q
    ||||||||||||  ||||||||| | ||||| |||| |||||||||||||| | | ||||| || | || |||| ||||| ||||||| ||||||| |||    
T  26924070 gctcatttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttgagtgcccttatcaactattggtgcattcttctttatcata 26924169  T
Q  181 aatgcaaaatgtaatatattgaattatgagtggt 214  Q
    |||||||| | ||||||||||||||  |||||||    
T  26924170 aatgcaaagtataatatattgaattgagagtggt 26924203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 50926914 - 50926802
Alignment:
Q  73 gagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctc 171  Q
    |||| |||| |||||||||||||||||||||| |  |||||||| ||||||||||| |||||  |||||||||   ||||||| ||||| ||||||| ||    
T  50926914 gagcttttttctcatttcacatatattaagaaaaattgtataagaaaaagagagagaaaaatggttttgaatgcatttgtcaagtattggtgcattcttc 50926815  T
Q  172 tttattataaatg 184  Q
    ||||| |||||||    
T  50926814 tttatcataaatg 50926802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 24131353 - 24131483
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaa 182  Q
    |||||||||||  ||||||||| | | |||||||| ||||||||| |||||  ||||||||| | || |||| ||| | ||||||| ||||||| |||||    
T  24131353 ctcatttcacacttattaagaaaaagcgtataagtgaaagagaga-aaaatggttttgaatgcccttatcaactataggtgcattcttctttatcataaa 24131451  T
Q  183 tgcaaaatgtaatatattgaattatgagtggt 214  Q
    |||||| | ||||||||||||||  |||||||    
T  24131452 tgcaaagtataatatattgaattgggagtggt 24131483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 29756092 - 29756225
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattata 180  Q
    ||||||||||||  ||||||||| | |||||||||| |||||||||||||| |   ||||| || | || |||| ||||| ||||||| ||||||| |||    
T  29756092 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttatcaactattggtgcattcttctttatcata 29756191  T
Q  181 aatgcaaaatgtaatatattgaattatgagtggt 214  Q
    |||||||| |  |||||||||||||  |||||||    
T  29756192 aatgcaaagtagaatatattgaattgggagtggt 29756225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 10587533 - 10587655
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||  ||||||||| | ||| |||||| ||||| |||||||| ||||||| | ||||||| |||| ||| ||| ||||| || |||| ||||    
T  10587533 ctcatttcacacttattaagaaaaagtgcataagtgaaagaaagagaaaaataattttaagtgtcattatcaattat-gatacattcttcattatcataa 10587631  T
Q  182 atgcaaaatgtaatatattgaatt 205  Q
    |||||||||  |||||||||||||    
T  10587632 atgcaaaatagaatatattgaatt 10587655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 27932794 - 27932916
Alignment:
Q  93 atatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatg 191  Q
    |||||||||| | | || ||||||| |||||||||||||| |   ||||| |||| ||||||| ||||| ||||||| ||||||| ||||||||||| |     
T  27932794 atatattaagtaaaagtatataagtgaaagagagagaaaaatgcgtttgagtgtccttgtcaactattggtgcattcttctttatcataaatgcaaagta 27932893  T
Q  192 taatatattgaattatgagtggt 214  Q
     |||||||||||||  |||||||    
T  27932894 gaatatattgaattgagagtggt 27932916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 37495959 - 37495863
Alignment:
Q  108 gtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    |||||||| | ||| ||||||||| | |||||||||||| || |||| ||||| ||||||| ||||||||||||||| ||| |  |||||||||||||    
T  37495959 gtgtataaatgaaaaagagagaaa-tgattttgaatgtctttatcaagtattggtgcattcttctttattataaatgtaaagtagaatatattgaatt 37495863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 29225321 - 29225482
Alignment:
Q  48 ttacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgt---gtataagtaaaagagagag-aaaataattttgaat 143  Q
    ||||| |||| |||||||||||   |||  |||||||||||||||| |||||||||| | ||   |||||||| |||||| ||| ||||| ||||||| |    
T  29225321 ttactccctccgtcccattataattgagtcttttgctcatttcacacatattaagaaaaagtgtagtataagtgaaagagtgagaaaaatgattttgagt 29225420  T
Q  144 gtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    | | |||| || ||||| ||||||| | ||||| ||||||| ||| |  |||||||||||||    
T  29225421 gcctttgttaagtattggtgcattcttttttatcataaatggaaagtagaatatattgaatt 29225482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 31634249 - 31634346
Alignment:
Q  85 catttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatg 184  Q
    ||||||||||| |||||||| |  ||||||| |||||||||||||||| |   |||| |||| |||| || ||||||||||||||||||||| |||||||    
T  31634249 catttcacatagattaagaaaaa-tgtataaataaaagagagagaaaa-atggttgagtgtctttgttaagtattgatgcattcctctttatcataaatg 31634346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 27209921 - 27210050
Alignment:
Q  85 catttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    ||||| ||| |||||||||| | |||||||| | |||||||||| ||||| ||||||| |||| ||| ||| ||||| ||||||| ||||||| ||||||    
T  27209921 cattttacacatattaagaaaa-gtgtataaatgaaagagagagaaaaatgattttgagtgtctttgacaagtattggtgcattcttctttatcataaat 27210019  T
Q  184 gcaaaatgtaatatattgaattatgagtggt 214  Q
    | |||    |||||||||||||  |||||||    
T  27210020 gtaaaggagaatatattgaattgagagtggt 27210050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 705303 - 705432
Alignment:
Q  86 atttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatg 184  Q
    |||||| | |||||||||| |  ||||||||| ||||||| |||||| | |||||||||||| || | || ||||  ||||||| ||||||| ||| |||    
T  705303 atttcatacatattaagaaaaaatgtataagttaaagagaaagaaaaatgattttgaatgtctttattaagtattagtgcattcttctttatcatagatg 705402  T
Q  185 caaaatgtaatatattgaattatgagtggt 214  Q
     ||| | ||||||||||||||  |||||||    
T  705403 taaagtataatatattgaattgagagtggt 705432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 2219425 - 2219522
Alignment:
Q  109 tgtataagtaaaagagagagaa-aataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    ||||||| | |||||||||||| ||| ||||||| |||| || | ||| |||||||||||| ||||||| ||||||| ||| |  |||||||||||||    
T  2219425 tgtataaatgaaagagagagaataatgattttgagtgtctttataaaagattgatgcattcttctttatcataaatgtaaagtaaaatatattgaatt 2219522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 45305963 - 45305887
Alignment:
Q  128 gaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    |||||||||||||| |||| ||||||| |||| |||||||| || |||| ||||||||||| |  |||||||||||||    
T  45305963 gaaaataattttgagtgtc-ttgtcaagtatttatgcattcttcattatcataaatgcaaagtagaatatattgaatt 45305887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 36326159 - 36326258
Alignment:
Q  85 catttcacatatattaagaacatgtgtataagtaaaagagagagaa-aataattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    ||||||||| | |||||||| | |||||||| | |||||||||||| |||  |||||| |||| ||||||||||||| ||||||| | ||||| ||||||    
T  36326159 catttcacacagattaagaaaa-gtgtataaatgaaagagagagaacaatggttttgagtgtctttgtcaaatattggtgcattcttgtttatcataaat 36326257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 46273270 - 46273223
Alignment:
Q  129 aaaataattttgaatgtcattgtcaaatattgatgcattcctctttat 176  Q
    |||||||||||||||||  ||||||| ||||||||||||| |||||||    
T  46273270 aaaataattttgaatgtttttgtcaagtattgatgcattcttctttat 46273223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 52382390 - 52382469
Alignment:
Q  135 attttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaattatgagtggt 214  Q
    ||||||| |||| | ||||| ||||||||||||| ||||||| ||||||| ||| |  |||||||||||||  |||||||    
T  52382390 attttgagtgtcttagtcaagtattgatgcattcttctttatcataaatgtaaagtaaaatatattgaattgagagtggt 52382469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 2571514 - 2571397
Alignment:
Q  87 tttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgca 186  Q
    ||||||| |||||||||| |  ||||||| | |||||||||||||||| |||||| |||| |||| || ||||| ||||||  |  ||||  ||||||||    
T  2571514 tttcacacatattaagaaaaaatgtataaatgaaagagagagaaaatagttttgagtgtc-ttgttaagtattggtgcattatttcttatcctaaatgca 2571416  T
Q  187 aaatgtaatatattgaatt 205  Q
    || |  |||||||||||||    
T  2571415 aagtagaatatattgaatt 2571397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 3160638 - 3160744
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||  ||||||||| | |||||||||| ||||||| |||||| |   ||||| || | ||||||| ||||| ||||||  ||||||| ||||    
T  3160638 ctcatttcacacttattaagaaaaagtgtataagtgaaagagaaagaaaaatgggtttgagtgcccttgtcaactattggtgcattattctttatcataa 3160737  T
Q  182 atgcaaa 188  Q
    |||||||    
T  3160738 atgcaaa 3160744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 5115829 - 5115899
Alignment:
Q  135 attttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    ||||||| |||| ||| ||| ||||||||||||| ||||||| ||||||| || ||  |||||||||||||    
T  5115829 attttgagtgtctttgacaagtattgatgcattcttctttatcataaatgtaatatagaatatattgaatt 5115899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 35622769 - 35622853
Alignment:
Q  121 agagagaga-aaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    ||||||||| ||||| ||||||||||| ||||| | |||||||||||||||  || | ||||||||||| |  |||||||||||||    
T  35622769 agagagagagaaatagttttgaatgtc-ttgtcgagtattgatgcattccttcttgtgataaatgcaaagtagaatatattgaatt 35622853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 29225870 - 29225787
Alignment:
Q  121 agagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    ||||||||||||||  ||||| |||| ||||||| ||||| ||||||| |  |||| ||||||||||| |  |||||||||||||    
T  29225870 agagagagaaaataggtttgagtgtc-ttgtcaagtattggtgcattcattcttatcataaatgcaaagtagaatatattgaatt 29225787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 54021433 - 54021540
Alignment:
Q  108 gtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatta 206  Q
    |||||||| |||||||||||||||| | ||||||| |||| || |||||||||| ||||||| ||||||||||||||| ||| |  |||||||||||||     
T  54021433 gtgtataaataaaagagagagaaaaatgattttgagtgtctttatcaaatattgttgcattcttctttattataaatgtaaagtagaatatattgaattc 54021532  T
Q  207 tgagtggt 214  Q
     |||||||    
T  54021533 ggagtggt 54021540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 51165105 - 51164986
Alignment:
Q  86 atttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatg 184  Q
    |||||||| | |||||||| | |||||||| |||||||||||||||| ||||||||| |||| || |||| ||||| ||||||| ||||||| |||||||    
T  51165105 atttcacacaaattaagaaaa-gtgtataaataaaagagagagaaaaataattttgagtgtctttatcaagtattggtgcattcttctttatcataaatg 51165007  T
Q  185 caaaatgtaatatattgaatt 205  Q
     ||| |  |||||||||||||    
T  51165006 taaagtagaatatattgaatt 51164986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 1334732 - 1334863
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    ||||||||||| | |||||||| | | |||||| | |||||||||||||| |||||||||||| | || |||| ||||| ||||||| ||||||| ||||    
T  1334732 ctcatttcacacagattaagaaaa-gcgtataaatgaaagagagagaaaaataattttgaatgcctttatcaagtattggtgcattcttctttatcataa 1334830  T
Q  182 atgcaaaatgtaatatattgaattatgagtggt 214  Q
    ||| ||| |  |||||||||||||  |||||||    
T  1334831 atgtaaagtagaatatattgaattgggagtggt 1334863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 36315680 - 36315784
Alignment:
Q  78 ttttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttatt 177  Q
    ||||||||||| |||| |||||||||| | |||||||||||||||||||| ||||  |||| || |||| |||| || ||||| | ||||| |||||||     
T  36315680 ttttgctcattccacacatattaagaaaaagtgtataagtaaaagagaga-aaaacgatttcgagtgtctttgttaagtattggtacattcttctttatc 36315778  T
Q  178 ataaat 183  Q
    ||||||    
T  36315779 ataaat 36315784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 39329705 - 39329823
Alignment:
Q  87 tttcacatatattaagaacatgtgtataagtaaaagagagaga-aaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgc 185  Q
    ||||||| |||||||||| |  ||||||||| ||||||| ||| ||||| ||||||||||| |||| || ||||| ||||||| |  |||| ||||||||    
T  39329705 tttcacacatattaagaaaaaatgtataagtgaaagagaaagataaatagttttgaatgtc-ttgttaagtattggtgcattctttcttatcataaatgc 39329803  T
Q  186 aaaatgtaatatattgaatt 205  Q
    ||| |  |||||||||||||    
T  39329804 aaagtagaatatattgaatt 39329823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 42547061 - 42547179
Alignment:
Q  87 tttcacatatattaagaacatgtgtataagtaaaagagag-agaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgc 185  Q
    ||||||| |||||||||| |  | |||||||||||||||| | |||||| ||||||||||| |||| || ||||| ||||||| |  |||| ||||||||    
T  42547061 tttcacacatattaagaaaaaatttataagtaaaagagagaaaaaaatagttttgaatgtc-ttgttaagtattggtgcattctttcttatcataaatgc 42547159  T
Q  186 aaaatgtaatatattgaatt 205  Q
    ||||   |||||||||||||    
T  42547160 aaaagagaatatattgaatt 42547179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 29858854 - 29858947
Alignment:
Q  121 agagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaattatgagtggt 214  Q
    ||||||||| |||  |||||| |||  ||||||| ||||| | ||||| ||||||| ||||||| ||| |  ||||||||||||||||||||||    
T  29858854 agagagagagaatggttttgagtgtttttgtcaagtattggtacattcttctttatcataaatgtaaagtagaatatattgaattatgagtggt 29858947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 205
Target Start/End: Complemental strand, 41287393 - 41287296
Alignment:
Q  109 tgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    ||||||||| |||||||||||||| |  |||||| | || ||||||| ||||||||||||  ||||||| ||||||| ||| |  |||||||||||||    
T  41287393 tgtataagtgaaagagagagaaaaatggttttgactatctttgtcaagtattgatgcattattctttatcataaatgtaaagtagaatatattgaatt 41287296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 53583513 - 53583633
Alignment:
Q  85 catttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    |||||||| | || |||||| | ||||||||   ||||||| |||||| || ||||||||||  ||||||| ||||||||||||| || |||||||||||    
T  53583513 catttcacgtgtactaagaaaaagtgtataaaagaaagagatagaaaaatagttttgaatgtg-ttgtcaagtattgatgcattcttcattattataaat 53583611  T
Q  184 gcaaaatgtaatatattgaatt 205  Q
    ||||| |  ||||||| |||||    
T  53583612 gcaaagtagaatatatggaatt 53583633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 9218297 - 9218179
Alignment:
Q  87 tttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgc 185  Q
    ||||||| |||||||||| | |||||||||| |||||||||| |||||| |||||| |||| | || || ||||| ||||||| |  |||| ||||||||    
T  9218297 tttcacacatattaagaaaaagtgtataagtgaaagagagagaaaaatagttttgagtgtc-tcgttaagtattggtgcattctttcttatcataaatgc 9218199  T
Q  186 aaaatgtaatatattgaatt 205  Q
    ||| |  |||||| ||||||    
T  9218198 aaagtagaatataatgaatt 9218179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 30261444 - 30261574
Alignment:
Q  73 gagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctc 171  Q
    |||| ||||| |||||||||  ||||||||||   |||||  ||| |||||||||||||| || |||||| || | ||||||| ||||| |||||||||     
T  30261444 gagccttttgttcatttcacgcatattaagaaagagtgta--agtgaaagagagagaaaaatagttttgactggc-ttgtcaagtattggtgcattcctt 30261540  T
Q  172 tttattataaatgcaaaatgtaatatattgaatt 205  Q
     |||| ||||||| ||| || |||||||||||||    
T  30261541 cttatcataaatgtaaagtggaatatattgaatt 30261574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 3862119 - 3862245
Alignment:
Q  78 ttttgctcatttcacatatattaagaacatgtgtataagt--aaaagagaga-gaaaataattttgaatgtcattgtcaaatattgatgcattcctcttt 174  Q
    ||||| |||||| ||||||||||||||   |||||| |||  |||| ||||| |||||| ||||||| |||| |||||||  ||||||||||||| | ||    
T  3862119 ttttgttcattttacatatattaagaa---gtgtattagtgaaaaatagagatgaaaattattttgagtgtc-ttgtcaaggattgatgcattccacatt 3862214  T
Q  175 attataaatgcaaaatgtaatatattgaatt 205  Q
    || ||||||||||| |  |||||| ||||||    
T  3862215 atcataaatgcaaattaaaatatactgaatt 3862245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 46194160 - 46194288
Alignment:
Q  86 atttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatg 184  Q
    ||||||||  ||||||||| | |||||||||| |||||||||||||| |   ||||| || | || |||| | ||| ||||||| ||||||| |||||||    
T  46194160 atttcacacttattaagaaaaagtgtataagttaaagagagagaaaaatgggtttgagtgcccttatcaactgttggtgcattc-tctttatcataaatg 46194258  T
Q  185 caaaatgtaatatattgaattatgagtggt 214  Q
    |||| |  |||||||||||||  |||||||    
T  46194259 caaagtagaatatattgaattgagagtggt 46194288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 44218980 - 44219106
Alignment:
Q  78 ttttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttat 176  Q
    ||||| |||||||||| |||||||||| | |||||||||| ||||| |||||||| |  |||||| |||| |||| || | ||| |||||||| | ||||    
T  44218980 ttttgttcatttcacacatattaagaaaaagtgtataagtcaaagaaagagaaaaatggttttgagtgtc-ttgt-aagtgttggtgcattccccattat 44219077  T
Q  177 tataaatgcaaaatgtaatatattgaatt 205  Q
     |||||| |||| |  |||||||||||||    
T  44219078 cataaatacaaagtagaatatattgaatt 44219106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 352415 - 352534
Alignment:
Q  84 tcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    |||||||||| | |||||||| | |||||||| ||||||||||| ||||||||||||| |||| |||| || ||||| ||||||| ||||||| ||||||    
T  352415 tcatttcacacagattaagaaaa-gtgtataaataaaagagaga-aaaataattttgagtgtctttgttaagtattggtgcattcttctttatcataaat 352512  T
Q  184 gcaaaatgtaatatattgaatt 205  Q
    | ||| |  |||||||||||||    
T  352513 gtaaagtagaatatattgaatt 352534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 14690117 - 14689985
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||  ||||||||| | |||||||||| |||||||||| |||||  |||||| |||| || |||| ||||| ||||||| | ||||| ||||    
T  14690117 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttgagtgtccttatcaactattggtgcattcttttttatcataa 14690018  T
Q  182 atgcaaaatgtaatatattgaattatgagtggt 214  Q
    ||||||| |  |||||||||||||  |||||||    
T  14690017 atgcaaagtagaatatattgaattgggagtggt 14689985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 36011939 - 36012037
Alignment:
Q  78 ttttgctcatttcacatatattaagaacatgtgtataagtaaaagagagaga-aaataattttgaatgtcattgtcaaatattgatgcattcctctttat 176  Q
    ||||| ||||||||||||| ||||||| |||||||||||| ||||||| ||| ||||  |||||| |||| ||||||| |||||||||||| ||||||||    
T  36011939 ttttgttcatttcacatatgttaagaaaatgtgtataagtgaaagagaaagagaaatggttttgagtgtc-ttgtcaagtattgatgcatttctctttat 36012037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 2195620 - 2195502
Alignment:
Q  87 tttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgc 185  Q
    ||||||| |||||||||| | |||||||||| |||||||||| |||||| |||||| |||| |||| || ||||| ||||||| |  |||| ||||||||    
T  2195620 tttcacacatattaagaaaaagtgtataagtgaaagagagagaaaaatagttttgagtgtc-ttgttaagtattggtgcattctttcttatcataaatgc 2195522  T
Q  186 aaaatgtaatatattgaatt 205  Q
    ||| |  |||||||||||||    
T  2195521 aaagtagaatatattgaatt 2195502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 25174535 - 25174658
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaa-aataattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    ||||||||| || ||||||||| |  ||||||||||||||||||| || ||| ||||||| || | || | || ||||| ||||||  ||||||||||||    
T  25174535 ctcatttcatatttattaagaaaaaatgtataagtaaaagagagaaaagaatgattttgagtgcccttattaactattggtgcattattctttattataa 25174634  T
Q  182 atgcaaaatgtaatatattgaatt 205  Q
    ||||||| |  |||||||||||||    
T  25174635 atgcaaagtagaatatattgaatt 25174658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 45420888 - 45421021
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattata 180  Q
    ||||||||||||  ||||||||| | |||||||||| |||||||||||||| |   ||||| || | ||||||| | |||  |||||| ||||||| |||    
T  45420888 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttgtcaacttttggagcattcttctttatcata 45420987  T
Q  181 aatgcaaaatgtaatatattgaattatgagtggt 214  Q
    |||||||| |  |||||||||||| | |||||||    
T  45420988 aatgcaaagtaaaatatattgaatcaggagtggt 45421021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 15020957 - 15020867
Alignment:
Q  49 tacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttga 141  Q
    |||| |||| |||||||| || | |||||| ||| ||||||||||||||||||||| || ||||||||| ||||||||| ||||| |||||||    
T  15020957 tactccctccgtcccattttaagtgagcatattgttcatttcacatatattaagaaaat-tgtataagttaaagagaga-aaaatgattttga 15020867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 11637304 - 11637165
Alignment:
Q  76 cattttgctcatttcacatatattaagaacatgtgtataagtaaa-agagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctcttt 174  Q
    ||||||| |||| ||||| |||||||||| | |||||||||||||   ||||||||||   |||||| |||| ||| ||| ||||||| ||||  |||||    
T  11637304 cattttgttcatgtcacacatattaagaaaaagtgtataagtaaattaagagagaaaaatgttttgagtgtctttgccaagtattgatacattattcttt 11637205  T
Q  175 attataaatgcaaaatgtaatatattgaattatgagtggt 214  Q
    || ||||||| ||| |  |||||||||||||  |||||||    
T  11637204 atcataaatgtaaagtagaatatattgaattgagagtggt 11637165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 40077713 - 40077823
Alignment:
Q  95 atattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgta 193  Q
    |||||||||| | |||||||| | ||||||||| |||| | ||||||| |||| ||||||| ||||| ||||||| ||||||| ||||||| ||| |  |    
T  40077713 atattaagaaaa-gtgtataaatgaaagagagaaaaaaatgattttgagtgtctttgtcaagtattggtgcattcttctttatcataaatgtaaagtaga 40077811  T
Q  194 atatattgaatt 205  Q
    ||||||||||||    
T  40077812 atatattgaatt 40077823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 42412330 - 42412456
Alignment:
Q  79 tttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttatt 177  Q
    ||||||||||||||| |||||||||| |  ||||||||| || ||||||||||| || |||| | ||   |||||| |||||| |||||||  | ||||     
T  42412330 tttgctcatttcacacatattaagaaaaa-tgtataagtgaatgagagagaaaaatagttttaagtgctcttgtcatatattggtgcattctccattatc 42412428  T
Q  178 ataaatgcaaaatgtaatatattgaatt 205  Q
    ||||||||||| || |||||||||||||    
T  42412429 ataaatgcaaagtggaatatattgaatt 42412456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 29638455 - 29638326
Alignment:
Q  85 catttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    ||||||||| | |||||||| | |||||||| | ||||| |||||||| |  ||||||||| | ||||||| ||||| | ||||  ||||||| ||||||    
T  29638455 catttcacacagattaagaaaa-gtgtataaatgaaagaaagagaaaaatggttttgaatgcctttgtcaagtattggttcattattctttatcataaat 29638357  T
Q  184 gcaaaatgtaatatattgaattatgagtggt 214  Q
    | ||| | ||||||||||||||| |||||||    
T  29638356 gtaaagtataatatattgaattaggagtggt 29638326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 32231336 - 32231438
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagaga-gaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataa 181  Q
    |||||||||||| ||||||||| |  ||||||||| ||||||||| ||||||  |||||| || | || |||| |||||||| |||| ||||||| ||||    
T  32231336 ctcatttcacatttattaagaaaaaatgtataagtgaaagagagaggaaaatggttttgagtgcccttatcaactattgatgtattcttctttatcataa 32231435  T
Q  182 atg 184  Q
    |||    
T  32231436 atg 32231438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 1494197 - 1494304
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattata 180  Q
    ||||||||||||  ||||||| | |  |||||| || |||||| ||||||| | ||||||| || | || |||| ||||||||||||| ||||||| |||    
T  1494197 gctcatttcacacttattaaggaaaaatgtatatgtgaaagagtgagaaaaatgattttgagtgcccttatcaattattgatgcattcttctttatcata 1494296  T
Q  181 aatgcaaa 188  Q
    ||||||||    
T  1494297 aatgcaaa 1494304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 8840519 - 8840442
Alignment:
Q  47 attacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagaga 125  Q
    |||| |||||| ||||||||||| | |||| ||||| |||||||||| |||||||||| |  ||||||||| |||||||    
T  8840519 attaattcctccgtcccattataagtgagccttttg-tcatttcacacatattaagaaaaattgtataagtgaaagaga 8840442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 26677227 - 26677124
Alignment:
Q  86 atttcacatatattaagaacatgtgtataagtaaaagagagagaaaa--taattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    |||||||| |||||||||| |  ||||||||| ||||||||||||||  |  |||| | ||||||||| |||||||| |||||||  | |||| ||||||    
T  26677227 atttcacacatattaagaaaaa-tgtataagtgaaagagagagaaaaatttgttttaagtgtcattgtaaaatattggtgcattcaccattatcataaat 26677129  T
Q  184 gcaaa 188  Q
    |||||    
T  26677128 gcaaa 26677124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 28791462 - 28791342
Alignment:
Q  85 catttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaat 183  Q
    ||||||||| | |||||||| | ||||||||   |||||||||||||| || |||||| || | || |||| ||||| ||||||| ||||||| ||||||    
T  28791462 catttcacacagattaagaaaa-gtgtataaagtaaagagagagaaaaatagttttgagtgcctttttcaagtattggtgcattcttctttatcataaat 28791364  T
Q  184 gcaaaatgtaatatattgaatt 205  Q
    | ||| |  |||||||||||||    
T  28791363 gtaaactagaatatattgaatt 28791342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 886397 - 886521
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagaga-gaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattata 180  Q
    ||||||||||||  ||||||||| | ||||| |||| ||||||||| | |||| | ||||| |||| || |||| |||   ||||||| ||||||| |||    
T  886397 gctcatttcacacttattaagaaaaagtgtacaagtgaaagagagagggaaatgagtttgattgtccttatcaactatctgtgcattcttctttatcata 886496  T
Q  181 aatgcaaaatgtaatatattgaatt 205  Q
    |||||||| |  ||||||| |||||    
T  886497 aatgcaaagtagaatatatcgaatt 886521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 26570141 - 26570208
Alignment:
Q  120 aagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaa 188  Q
    |||||||||||| ||||||||| ||   ||||||| ||||||||||||| || |||| |||||||||||    
T  26570141 aagagagagaaa-taattttgagtgattttgtcaagtattgatgcattcgtcattatcataaatgcaaa 26570208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 38201389 - 38201464
Alignment:
Q  129 aaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    |||||||||||||||||| || |||||||||  ||||||| | ||||| ||||||||||| |  | |||||||||||    
T  38201389 aaaataattttgaatgtc-ttatcaaatatttgtgcattcatttttatcataaatgcaaattagagtatattgaatt 38201464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 41759635 - 41759703
Alignment:
Q  137 tttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatt 205  Q
    ||||| |||| ||||||| ||||| ||||||| ||||||| |||||| |||| |  |||||||||||||    
T  41759635 tttgagtgtccttgtcaattattggtgcattcttctttatcataaatacaaagtaaaatatattgaatt 41759703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 34803654 - 34803780
Alignment:
Q  82 gctcatttcacatatattaagaacatgtgtataagtaaaagagagag-aaaataattttgaatgtcattgtcaaatattgatgcattcctctt--tatta 178  Q
    ||||||||||||  ||||||||| | ||||||||   |||||||||| |||||  |||||| |||| || |||| ||||||||||||||||||  ||| |    
T  34803654 gctcatttcacacttattaagaaaaagtgtataaaggaaagagagaggaaaatggttttgagtgtctttatcaactattgatgcattcctctttatatca 34803753  T
Q  179 taaatgcaaaatgtaatatattgaatt 205  Q
    ||||||||||||  |||||||||||||    
T  34803754 taaatgcaaaataaaatatattgaatt 34803780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 214
Target Start/End: Original strand, 15371815 - 15371945
Alignment:
Q  84 tcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaa 182  Q
    ||||||||||  ||||||||| | |||||||||| |||| ||||||||| |  |||||| |||| || |||| ||||  ||||||| ||||||| |||||    
T  15371815 tcatttcacaattattaagaaaaagtgtataagtgaaagcgagagaaaaatggttttgagtgtc-ttatcaactattagtgcattcttctttatcataaa 15371913  T
Q  183 tgcaaaatgtaatatattgaattatgagtggt 214  Q
    |||||| |  |||||||||||||  |||||||    
T  15371914 tgcaaagtagaatatattgaattgggagtggt 15371945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 3874025 - 3874129
Alignment:
Q  108 gtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatta 206  Q
    |||||||| | ||||||||| |||| | ||||||| |||| ||||||| ||||| ||||||  ||||||| ||||||| ||| |  ||||||||||||||    
T  3874025 gtgtataaatgaaagagagaaaaaaatgattttgagtgtctttgtcaagtattggtgcattattctttatcataaatgtaaagttgaatatattgaatta 3874124  T
Q  207 tgagt 211  Q
     ||||    
T  3874125 ggagt 3874129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 15325303 - 15325253
Alignment:
Q  83 ctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaat 133  Q
    |||||||||||  ||||||||| | |||||||||| |||||||||||||||    
T  15325303 ctcatttcacaattattaagaaaaagtgtataagtgaaagagagagaaaat 15325253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 31075868 - 31075997
Alignment:
Q  76 cattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctcttt 174  Q
    ||||||| |||||||||  | |||||||| |  |||| |||| |||||||||||||| |  | |||| |||| || |||| ||||| |||||||||  ||    
T  31075868 cattttgttcatttcacccacattaagaaaaaatgtacaagtgaaagagagagaaaaatggtattgagtgtcttt-tcaactattggtgcattccttctt 31075966  T
Q  175 attataaatgcaaaatgtaatatattgaatt 205  Q
    || |||||| |||||| ||||||||||||||    
T  31075967 atcataaatacaaaatataatatattgaatt 31075997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 33017948 - 33018026
Alignment:
Q  136 ttttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaattatgagtggt 214  Q
    |||||| |||| ||||||| ||||| ||||||| ||||||| ||||||| ||| |  |||||||||||||  |||||||    
T  33017948 ttttgagtgtctttgtcaagtattggtgcattcttctttatcataaatgtaaagtagaatatattgaattgggagtggt 33018026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 206
Target Start/End: Original strand, 12350 - 12510
Alignment:
Q  47 attacttcctctgtcccattatatgcgagcattttgctcatttcacatatattaagaacatgtgtataagtaaaagagagagaa-aataattttgaatgt 145  Q
    |||||| |||| || |||||||| | ||||| || ||||||||||||  ||||||||| |   |||||| | |||||||| ||| |||  |||||| |||    
T  12350 attactccctccgttccattataagtgagcaattggctcatttcacacgtattaagaaaaaacgtataaatgaaagagagtgaataatggttttgagtgt 12449  T
Q  146 cattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaatta 206  Q
    | ||||||| ||||  ||||||| ||||||||||||||| ||| |  ||||||||||||||    
T  12450 ctttgtcaagtattagtgcattcttctttattataaatgtaaagtagaatatattgaatta 12510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 5969 - 5843
Alignment:
Q  86 atttcacatatattaagaacatgtgtataagtaaaagagagagaaaataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgc 185  Q
    |||||||| | |||||||| | |||||||| ||||||||||| ||||| || |||| |||| || |||| |||||||||||| |||||||| |||||||     
T  5969 atttcacacaaattaagaaaa-gtgtataaataaaagagaga-aaaatgatcttgagtgtctttatcaagtattgatgcattgctctttatcataaatgt 5872  T
Q  186 aaaatgtaatatattgaattatgagtggt 214  Q
    ||| |  |||||||||||||  |||||||    
T  5871 aaagtagaatatattgaattgagagtggt 5843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 4484 - 4437
Alignment:
Q  86 atttcacatatattaagaacatgtgtataagtaaaagagagagaaaat 133  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  4484 atttcacacatattaagaaaatgtgtataagtaaaagagagagaaaat 4437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 6386 - 6482
Alignment:
Q  119 aaagagagagaaa-ataattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaattatgagtggt 214  Q
    ||||||||||| | || ||||||| |||| | ||||| ||||||||||||| ||||||| ||||||| ||| |  |||||||||||||  |||||||    
T  6386 aaagagagagagagatgattttgagtgtcttagtcaagtattgatgcattcttctttatcataaatgtaaagtaaaatatattgaattgagagtggt 6482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 10771 - 10873
Alignment:
Q  113 taagtaaaagagagagaaaa-taattttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaattatgagt 211  Q
    ||||| |||||||||||||| |   ||||| |||| || |||| ||||| | ||||| ||||||| ||||||||||| |  |||||||||||||| ||||    
T  10771 taagtgaaagagagagaaaaatgggtttgagtgtccttatcaactattggttcattcttctttatcataaatgcaaagtaaaatatattgaattaggagt 10870  T
Q  212 ggt 214  Q
    |||    
T  10871 ggt 10873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 220096 - 220018
Alignment:
Q  136 ttttgaatgtcattgtcaaatattgatgcattcctctttattataaatgcaaaatgtaatatattgaattatgagtggt 214  Q
    |||||| |||| || |||| |||| ||||| || ||||||| |||||||||||||  |||||||||||||  |||||||    
T  220096 ttttgagtgtccttatcaactatttatgcaatcttctttatcataaatgcaaaatagaatatattgaattgagagtggt 220018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University