View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2260_low_11 (Length: 207)
Name: NF2260_low_11
Description: NF2260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2260_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 69 - 194
Target Start/End: Complemental strand, 38197664 - 38197539
Alignment:
| Q |
69 |
ttatttatcatatgtgcggatggacgatcagcgcttttgaaaaaatcggaagcgagaggggacattcatggagtgaaggtgtgtcggggagctccactcc |
168 |
Q |
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| T |
38197664 |
ttatttatcatatgtgcggatggacgatcagcgcttttgaaaaaatcggaagcgagagtggacattcatggagggaaggtgtgtcggggagctccactcc |
38197565 |
T |
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| Q |
169 |
tcgcacacctattatttgctgatgat |
194 |
Q |
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| T |
38197564 |
tcacatacctattatttgctgatgat |
38197539 |
T |
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Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 38197918 - 38197845
Alignment:
| Q |
1 |
acccttaggacaaatgttagcatttaccaaaaagagaacttaggcagggtgatccagtgtcgccttatttattt |
74 |
Q |
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| T |
38197918 |
acccttaggacatatgttagcatttaccaaaaagagaacttaggcagggtgatgcactgttgccttatttattt |
38197845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 32757704 - 32757632
Alignment:
| Q |
121 |
cgagaggggacattcatggagtgaaggtgtgtcggggagctccactcctcgcacacctattatttgctgatga |
193 |
Q |
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| T |
32757704 |
cgagaggtgatattcatggtgtgaaggtgtgtcggggagctccgcttctaacacaccttttatttgcttatga |
32757632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 34210900 - 34210950
Alignment:
| Q |
144 |
aaggtgtgtcggggagctccactcctcgcacacctattatttgctgatgat |
194 |
Q |
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| T |
34210900 |
aaggtgtgtcgaggagctccgcttctcacacacctattatttgctgatgat |
34210950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 6510090 - 6510017
Alignment:
| Q |
117 |
gaagcgagaggggacattcatggagtgaaggtgtgtcggggagctccactcctcgcacacctattatttgctga |
190 |
Q |
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| T |
6510090 |
gaagcgagagtggatattcatggtgtgaagttgtgtcgaggagcactaatcctcacacaccttttatttgctga |
6510017 |
T |
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