View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2260_low_2 (Length: 432)
Name: NF2260_low_2
Description: NF2260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2260_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 446944 - 446564
Alignment:
| Q |
18 |
ataataattaaatacctgcaaaatgagccaagttgaccctccaacagtacttcccaaaagaattagacatccaagaaaccagttgttctcatcacttgtc |
117 |
Q |
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| T |
446944 |
ataataattaaatacctgcaaaatgagccaagttgaccctccaacagtacttcccaaaagaattagacatccaagaaaccagttgttctcatcacttgtc |
446845 |
T |
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| Q |
118 |
gaggttgtggccatgattgattttgaagatatattttctgcatttaaaagttttggacccttcaacaatgcgatggacattgctccacaaacacatatta |
217 |
Q |
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| T |
446844 |
gaggttgtggccatgattgattttgaagatatattttctgcatttaaaagttttggaccctttaacaatgcgatggacattgctccacaaacacatatta |
446745 |
T |
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| Q |
218 |
ttgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatataatcaatttcatattaattaatttgatggggcaac |
317 |
Q |
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| T |
446744 |
ttgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatataatcaatttcatattaattaatttgatggggcaac |
446645 |
T |
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| Q |
318 |
aaaaataggttgagtgtagttagaaatttaccctgcaaaggctgctattacaaatgtgattgctggaataagattgttcat |
398 |
Q |
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| T |
446644 |
aaaaataggttgagtgtagttagaaatttaccctgcaaaggctgctattacaaatgtgattgctggaataagattgttcat |
446564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 119 - 293
Target Start/End: Complemental strand, 467853 - 467679
Alignment:
| Q |
119 |
aggttgtggccatgattgattttgaagatatattttctgcatttaaaagttttggacccttcaacaatgcgatggacattgctccacaaacacatattat |
218 |
Q |
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| T |
467853 |
aggttgtggccatgattgattttgaaagtatcttatctgcatttagtagttttggacccttcaacaatgcaattgacactgctccacttacacatataat |
467754 |
T |
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| Q |
219 |
tgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatataatcaatttca |
293 |
Q |
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| T |
467753 |
tgtccccactattttggctatagttcttatacttcgaatattcactttttccattctgtaatataatcaatttca |
467679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 21 - 283
Target Start/End: Complemental strand, 474985 - 474723
Alignment:
| Q |
21 |
ataattaaatacctgcaaaatgagccaagttgaccctccaacagtacttcccaaaagaattagacatccaagaaaccagttgttctcatcacttgtcgag |
120 |
Q |
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| T |
474985 |
ataaataaatacctgcaaaatgagccaaagtgaccaggcaacactacttcccaaaagatacacacatccaagcaaccaactat---catcactaccggag |
474889 |
T |
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| Q |
121 |
gttgtggccatgattgattttgaagata---tattttctgcatttaaaagttttggacccttcaacaatgcgatggacattgctccacaaacacatatta |
217 |
Q |
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||| |||||||||| ||||||| || || | ||||||||||||| || |||||||||||||||||||| || |||| |||||||||||||||||||| |
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| T |
474888 |
gttatggccatgatagattttgtaggtagtatgttttctgcatttagtagctttggacccttcaacaatgctatagacaatgctccacaaacacatatta |
474789 |
T |
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| Q |
218 |
ttgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatata |
283 |
Q |
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||| || |||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| |
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| T |
474788 |
atgtccctactattttggctatagttctcaaacttcgaatgttgactttctccattctgtaatata |
474723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 127 - 285
Target Start/End: Complemental strand, 480229 - 480068
Alignment:
| Q |
127 |
gccatgattgattttgaagatatattttctgcatttaaaagt---tttggacccttcaacaatgcgatggacattgctccacaaacacatattattgttc |
223 |
Q |
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||||||||||| ||||||| ||| || |||||||||| ||| |||||||||||||||||||| || || | |||||||| | |||||| | ||| | |
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| T |
480229 |
gccatgattgactttgaagttatgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtcc |
480130 |
T |
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| Q |
224 |
ccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatataat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
480129 |
ccactattttggctatagttctcatacttcgaatatttactttctccattctgtaatataat |
480068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 289
Target Start/End: Complemental strand, 455667 - 455399
Alignment:
| Q |
27 |
aaatacctgcaaaatgagccaagttgaccctccaacagtacttcccaaaagaattagacatccaagaaaccagttgttctcatcacttgtcgaggttgtg |
126 |
Q |
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||||||||||||||| |||||| |||| || ||||| |||||||||| |||| ||||| |||| ||||| || |||||||||| | |||||||| |
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| T |
455667 |
aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaatt---ctcatcactttccaaggttgtg |
455571 |
T |
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| Q |
127 |
gccatgattgattttgaagatatatttt---ctgcatttaaaagttttggacccttcaacaatgcgatggacattg------ctccacaaacacatatta |
217 |
Q |
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| ||| |||| |||||||| || || | ||||||||| ||||||||||||||||| |||| ||||||| || ||||| ||||||||| | |
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| T |
455570 |
gtcatcattgtttttgaaggcatcttatgatctgcatttagtagttttggacccttcaataatgtcatggacagtgacactgctccagtaacacatatca |
455471 |
T |
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| Q |
218 |
ttgttcccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatataatcaat |
289 |
Q |
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|||| || |||||||||||||||||||||| |||| ||||||| | |||||||||||||||||||| ||||| |
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| T |
455470 |
ttgtcccaactattttggctatagttctcaaactttgaatattcactttctccattctgtaatatattcaat |
455399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 479987 - 479947
Alignment:
| Q |
345 |
ttaccctgcaaaggctgctattacaaatgtgattgctggaa |
385 |
Q |
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| T |
479987 |
ttaccctacaaaggctgctattacaaatgtgactgctggaa |
479947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 279
Target Start/End: Original strand, 27491398 - 27491647
Alignment:
| Q |
27 |
aaatacctgcaaaatgagccaagttgaccctccaacagtacttcccaaaagaattagacatccaagaaaccagttgttctcatcacttgtcgaggttgtg |
126 |
Q |
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||||||||||||||| |||||| ||||| ||||| ||||| ||||||| | ||||||||| ||||| || |||||||||| |||||||| |
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| T |
27491398 |
aaatacctgcaaaataagccaaactgaccaggcaacacagcttccaaaaagaaccaaacatccaagcaaccaatt---ctcatcacttcctaaggttgtg |
27491494 |
T |
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| Q |
127 |
gccatgattgattttgaagatatattttctgcatttaaaagttttggacccttcaacaatgcgatggacattgctccacaaacacatattattgttccca |
226 |
Q |
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| |||||||||||||||| ||| |||||||||||| || |||||||||||||| | ||| ||| ||| |||||||| |||| ||| |||||||| | |
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| T |
27491495 |
ccaatgattgattttgaagttatgctttctgcatttagcagctttggacccttcaatagtgcaatgaacactgctccacttacacctataattgttccta |
27491594 |
T |
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| Q |
227 |
ctattttggctatagttctcatacttcgaatattgaatttctccattctgtaa |
279 |
Q |
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|||||||||||||||||||| ||||| |||||| | || ||||||||||||| |
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| T |
27491595 |
ttattttggctatagttctcaaacttctaatattcacttgctccattctgtaa |
27491647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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