View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_high_12 (Length: 397)
Name: NF2261_high_12
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 43349593 - 43349201
Alignment:
| Q |
7 |
tcgaagaatatgaagaagccacaacagtagtggttactttggagatagttacttgcattttttaggttgaatttttcatatttaaaa--gagtccatccc |
104 |
Q |
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| T |
43349593 |
tcgaacaatatgaagaagccacaacagtagtggttactttggagatagttacttgcattttttaggttgaatttttcatatttaaaacagagtccatccc |
43349494 |
T |
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| Q |
105 |
agctacccaacaaacaagttgaaccatcttttctaaggactttgacaaatacaatttcaacatttataattattacttatcccaagcctataggaactaa |
204 |
Q |
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| T |
43349493 |
agctacccaacaaacaagttgaaccatcttttctaaggactttgacaaaaacaatttcaacatttataattattacttatcccaagcctataggaactaa |
43349394 |
T |
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| Q |
205 |
taatcaattattattagcaaaagaaattattcttaatcaaagaaaaacaataccaaatacaagaaaccactgcacagatatgcataatcaattgaattat |
304 |
Q |
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| T |
43349393 |
taatcaattattattagcaaaagaaattattcttaatcaaagaaaaacaataccaaatacaagaaaccactgcacagatatgcataatcaattgaattat |
43349294 |
T |
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| Q |
305 |
ggcatcactcatcaattggcaatgccaaaatatttaagaacaaaacaaaagtgtgtctgtctcacaaaacaaaggtacatatatattgaactt |
397 |
Q |
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| T |
43349293 |
ggcatcactcatcaattggcaatgccaaaatatttaagaacaaaacaaaagtgtgtctgtctcacaaaacaaaggtacatatatattgaactt |
43349201 |
T |
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