View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2261_high_18 (Length: 335)

Name: NF2261_high_18
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2261_high_18
NF2261_high_18
[»] chr3 (1 HSPs)
chr3 (16-323)||(42295149-42295455)
[»] chr1 (2 HSPs)
chr1 (19-217)||(20424198-20424395)
chr1 (24-260)||(43805988-43806222)
[»] chr4 (2 HSPs)
chr4 (24-273)||(11367567-11367814)
chr4 (24-206)||(21407696-21407877)
[»] chr5 (1 HSPs)
chr5 (24-212)||(20424090-20424277)
[»] chr2 (2 HSPs)
chr2 (24-292)||(15634357-15634624)
chr2 (42-179)||(21266802-21266938)
[»] scaffold0037 (1 HSPs)
scaffold0037 (24-194)||(108910-109079)
[»] chr7 (1 HSPs)
chr7 (24-179)||(49046146-49046300)
[»] chr8 (1 HSPs)
chr8 (282-318)||(34665060-34665096)
[»] chr6 (1 HSPs)
chr6 (19-79)||(13188087-13188147)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 42295455 - 42295149
Alignment:
Q  16 atttagggtgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacg 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42295455 atttagggtgccaatactctagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacg 42295356  T
Q  116 agataaacgtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagatcttccgcacatgagaatcggaattcaaagaaacctcg 215  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42295355 agataaacgtaacgattccggatt-caagttccaagtgtcattcgatcagacacttctaagatcttccgcacatgagaatcggaattcaaagaaacctcg 42295257  T
Q  216 acacaagggaatcattttccattgattaatgggtttctacaattgcaacaatttttcacgcaattctttagaggaaaatggcttatctcctcgagagaac 315  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42295256 acacaagggaatcattttcctttgactaatgggtttctacaattgcaacaatttttcacgcaattctttagaggaaaatggcttatctcctcgagagaac 42295157  T
Q  316 acaattct 323  Q
    ||||||||    
T  42295156 acaattct 42295149  T

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Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 20424395 - 20424198
Alignment:
Q  19 tagggtgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgaga 118  Q
    |||| |||||||| ||||||||||||||||| ||||| | ||| || |||||||||||||| || |||||||| |||||||||||  |||||||||| ||    
T  20424395 taggttgccaatattccagagggagataatgaaaacgcaaccaaacctgactatgagtttgtttctgattaaatgaattaaaatccggtgaccaacggga 20424296  T
Q  119 taaacgtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagatcttccgcacatgagaatcggaattcaaagaaacctcgac 217  Q
    ||| |||||| |   | |  ||||||||||||||  |||||||||| |||||||||||||| ||  ||||||||||||||||||| || ||||||||||    
T  20424295 taatcgtaac-agccccggcttcaagttccaagttccattcgaccaaacacttctaagatcatcaacacatgagaatcggaattcgaaaaaacctcgac 20424198  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 260
Target Start/End: Original strand, 43805988 - 43806222
Alignment:
Q  24 tgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaac 123  Q
    |||||||| |||||||| | |||||| ||||| || |||||||||||||||||||||   |||  ||||| |||||||||  | ||||| || |||||||    
T  43805988 tgccaatattccagaggaaaataatgaaaacgcactcatacttgactatgagtttgagcctgaacaaagggattaaaatccggagacca-cgtgataaac 43806086  T
Q  124 gtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagatcttccgcacatgagaatcggaattcaaagaaacctcgacacaagg 223  Q
    ||||| ||   || || ||| ||||||||| |||||||||| || ||||||||||| ||  |||| |||||||| |||||||| ||||| | || || ||    
T  43806087 gtaacaatcctggctt-caaattccaagtgccattcgaccagacgcttctaagatcatcaacacaggagaatcgaaattcaaaaaaacccctacccatgg 43806185  T
Q  224 gaatcattttccattgattaatgggtttctacaattg 260  Q
    ||||||| |||||||||| ||  |||||| |||||||    
T  43806186 gaatcatcttccattgatcaagaggtttccacaattg 43806222  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 273
Target Start/End: Complemental strand, 11367814 - 11367567
Alignment:
Q  24 tgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaac 123  Q
    |||||||| |||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||| | |||||||||  ||||||||||| ||||||    
T  11367814 tgccaatattccagaggaagataatgaaaacgcacccatacctggctatgagtttgattatgattaaatggattaaaatcaggtgaccaacgaaataaac 11367715  T
Q  124 gtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagatcttccgcacatgagaatcggaattcaaagaaacctcgacacaagg 223  Q
    | |||     |||| |||||||||||||   |||||||||| || ||||||||||| ||   |||||||||||| ||||| || || || |  | | | |    
T  11367714 gcaacagacccgga-ttcaagttccaagcaccattcgaccagacgcttctaagatcatcaatacatgagaatcgaaattcgaaaaatccccagcccgatg 11367616  T
Q  224 gaatcattttccattgattaatgggtttctacaattgcaacaatttttca 273  Q
    ||||| |||||||||||| ||| |||||| | ||||| ||||||||||||    
T  11367615 gaatc-ttttccattgataaataggtttccataattgtaacaatttttca 11367567  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 21407877 - 21407696
Alignment:
Q  24 tgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaac 123  Q
    |||||||| |||| ||| |||||||  ||| | |||||||| || |||||||||||| | ||| |||||| |||||||||| | ||||| || ||||||     
T  21407877 tgccaatattccataggaagataattaaaatgcacccatacctgcctatgagtttgagtctgaataaagggattaaaatctggcgaccagcgtgataaaa 21407778  T
Q  124 gtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagatcttccgcacatgagaatcggaattcaaa 206  Q
    ||||| |||  || || ||||||||||| | |||||||||| |||||||| ||||| || |||||||||||| | ||||||||    
T  21407777 gtaacaattatggctt-caagttccaagcgccattcgaccagacacttctgagatcatcagcacatgagaattgaaattcaaa 21407696  T

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Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 20424277 - 20424090
Alignment:
Q  24 tgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaac 123  Q
    |||||||| ||||| || |||||||| || || |||||||| |||||||  |||||| | |||||| ||| |||||||||  | |||||||| ||||| |    
T  20424277 tgccaatattccagtggaagataatgaaatcgtacccatacctgactattggtttgagtctgattagagggattaaaatccggagaccaacgcgataagc 20424178  T
Q  124 gtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagatcttccgcacatgagaatcggaattcaaagaaacc 212  Q
    ||||| | | |||  ||||||||||||| | ||||||||||||||||||||||||| || ||  ||||||| || |||||||| |||||    
T  20424177 gtaac-actccgggcttcaagttccaagcgccattcgaccatacacttctaagatcatcagcggatgagaagcgaaattcaaaaaaacc 20424090  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 292
Target Start/End: Complemental strand, 15634624 - 15634357
Alignment:
Q  24 tgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaac 123  Q
    |||||||| || | ||| |||||||  |||||||||||||| |||||||||||||| || ||  |  | ||| |||| ||| | ||||||||||| |       
T  15634624 tgccaataatctaaaggaagataataaaaacgaacccatacctgactatgagtttgtttttggctggaagaaataaattctggagaccaacgagaaagct 15634525  T
Q  124 gtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagatcttccgcacatgagaatcggaattcaaagaaacctcgacacaagg 223  Q
    ||| | || |||| ||||||||||||||   |||  ||||| |||||||||||||| |||||||| ||||| || |||||||| || || ||||  |  |    
T  15634524 gtagcaatctcgg-tttcaagttccaagcaccatgtgaccagacacttctaagatcatccgcacaagagaaacgaaattcaaaaaatccccgacctagag 15634426  T
Q  224 gaatcattttccattgattaatgggtttctacaattgcaacaatttttcacgcaattctttagaggaaa 292  Q
    ||||||| ||||| ||||| |  |||||| | ||  |||| | ||| || ||||| |||||||||||||    
T  15634425 gaatcatcttccactgattgagaggtttccataacagcaagagtttctcgcgcaaatctttagaggaaa 15634357  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 21266938 - 21266802
Alignment:
Q  42 agataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaacgtaacgatttcggatttc 141  Q
    |||||||| ||||| |||||||| | |||||| |||||| | ||||||  |  |||||||||  | |||||||| ||||| |||||| ||   || || |    
T  21266938 agataatgaaaacggacccatacctaactatgggtttgagtctgattagggagattaaaatccggagaccaacgcgataagcgtaacaatccaggctt-c 21266840  T
Q  142 aagttccaagtgtcattcgaccatacacttctaagatc 179  Q
    |||||||||  |||||||||||| ||||||||||||||    
T  21266839 aagttccaaaagtcattcgaccaaacacttctaagatc 21266802  T

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Target: scaffold0037 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 109079 - 108910
Alignment:
Q  24 tgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaac 123  Q
    ||||||||||| ||||| |||||||  ||||| |||||||| |||||||||||||| || ||  |  | ||| |||| ||| | ||||||||||| |  |    
T  109079 tgccaatactctagaggaagataataaaaacggacccatacctgactatgagtttgtttttggctggaagaaataaattctggagaccaacgagaaagcc 108980  T
Q  124 gtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagatcttccgcacatgagaa 194  Q
    ||| | ||  ||| ||||||||||||||   |||| ||||||| | |||||||||| |||||||| |||||    
T  108979 gtagcaatcccgg-tttcaagttccaagcaccatttgaccatatatttctaagatcatccgcacaagagaa 108910  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 49046300 - 49046146
Alignment:
Q  24 tgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaac 123  Q
    |||||||| ||||  || |||||||| ||||  |||||||  |||||||| |||||| | |||||| ||  ||||||||| || ||| |||| ||||  |    
T  49046300 tgccaatattccaatggaagataatgaaaacatacccatatctgactatgggtttgagtctgattagagagattaaaatccagagacaaacgcgatatgc 49046201  T
Q  124 gtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagatc 179  Q
    ||||| ||   || || ||||||||||| |||||||||||| ||| ||||||||||    
T  49046200 gtaacaatccaggctt-caagttccaagcgtcattcgaccagacatttctaagatc 49046146  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 34665096 - 34665060
Alignment:
Q  282 tttagaggaaaatggcttatctcctcgagagaacaca 318  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  34665096 tttagaggaaaatggcttatctccttgagacaacaca 34665060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 13188087 - 13188147
Alignment:
Q  19 tagggtgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttg 79  Q
    |||| |||||||| |||| ||| |||||||| |||| |||||||||  |||||||||||||    
T  13188087 taggttgccaatattccaaaggaagataatgaaaacaaacccatacccgactatgagtttg 13188147  T

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