View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2261_high_19 (Length: 334)

Name: NF2261_high_19
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2261_high_19
NF2261_high_19
[»] chr7 (6 HSPs)
chr7 (19-334)||(18350455-18350770)
chr7 (264-334)||(29574594-29574664)
chr7 (260-294)||(3836648-3836682)
chr7 (28-96)||(18349609-18349678)
chr7 (302-334)||(529382-529414)
chr7 (302-334)||(48917377-48917409)
[»] chr6 (5 HSPs)
chr6 (260-332)||(27857391-27857463)
chr6 (266-334)||(9041431-9041499)
chr6 (304-334)||(1401116-1401146)
chr6 (264-292)||(24181688-24181716)
chr6 (302-334)||(31812044-31812076)
[»] chr5 (5 HSPs)
chr5 (274-334)||(42646922-42646982)
chr5 (264-334)||(38047848-38047918)
chr5 (302-334)||(2568665-2568697)
chr5 (264-311)||(7808559-7808607)
chr5 (302-334)||(18543227-18543259)
[»] chr4 (9 HSPs)
chr4 (157-203)||(11431780-11431826)
chr4 (264-315)||(1554977-1555028)
chr4 (268-334)||(7730631-7730697)
chr4 (297-334)||(2733328-2733365)
chr4 (297-334)||(11262789-11262826)
chr4 (306-334)||(6360748-6360776)
chr4 (261-293)||(29913020-29913052)
chr4 (257-309)||(42461307-42461359)
chr4 (302-334)||(50742867-50742899)
[»] chr1 (4 HSPs)
chr1 (273-334)||(2035409-2035470)
chr1 (264-311)||(11941316-11941364)
chr1 (264-292)||(24360581-24360609)
chr1 (280-328)||(37842011-37842059)
[»] chr3 (7 HSPs)
chr3 (264-328)||(43046703-43046767)
chr3 (277-322)||(39921673-39921718)
chr3 (305-334)||(43875655-43875684)
chr3 (264-292)||(405191-405219)
chr3 (264-292)||(420858-420886)
chr3 (282-334)||(21872282-21872334)
chr3 (302-334)||(24280718-24280750)
[»] chr2 (7 HSPs)
chr2 (302-334)||(3049981-3050013)
chr2 (278-330)||(750485-750538)
chr2 (266-311)||(1801722-1801767)
chr2 (297-334)||(32757488-32757525)
chr2 (302-334)||(35379047-35379079)
chr2 (302-334)||(36863656-36863688)
chr2 (302-334)||(41170610-41170642)
[»] chr8 (6 HSPs)
chr8 (264-309)||(12851232-12851277)
chr8 (298-334)||(2107356-2107392)
chr8 (250-334)||(12496685-12496769)
chr8 (302-334)||(25097393-25097425)
chr8 (302-334)||(27028838-27028870)
chr8 (302-334)||(32507238-32507270)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 18350455 - 18350770
Alignment:
Q  19 atattacatgttttgtccttgttaatccagatccaattcaacttgttgcgatgcaaacatatctcattttattgttaccagttaccacacatcatatgca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18350455 atattacatgttttgtccttgttaatccagatccaattcaacttgttgcgatgcaaacatatctcattttattgttcccagttaccacacatcatatgca 18350554  T
Q  119 ataagtttaacatgcattatgttctttaacttttcatatagaatgcataactgagtcaaaatagtttaaaatgaatgctcatgctaacattggtttgttt 218  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18350555 ataagtttaacatgcattatgttctttaactttgcatatagaatgcataactgagtcaaaatagtttaaaatgaatgctcatgctaacattggtttgttt 18350654  T
Q  219 gagcttatttactggtataagtataaccatttatgcagttatgaaactgttttggagaacttatgaaaatagcttaaaacatgttcataagctctccatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18350655 gagcttatttactggtataagtataaccatttatgcagttatgaaactgttttggagaacttatgaaaatagcttaaaacatgttcataagctctccatg 18350754  T
Q  319 atagcttatgaaaaca 334  Q
    ||||||||||||||||    
T  18350755 atagcttatgaaaaca 18350770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 29574594 - 29574664
Alignment:
Q  264 actgttttggagaacttatgaaaatagcttaaaacatgttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||| |||||||||||| ||| ||||||  |||||| ||||| |||||||||||||| ||||||||||    
T  29574594 actgtttcggagaacttatggaaacagcttatgacatgtccataacctctccatgatagcatatgaaaaca 29574664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Original strand, 3836648 - 3836682
Alignment:
Q  260 tgaaactgttttggagaacttatgaaaatagctta 294  Q
    ||||||||||| |||||||||||||||||||||||    
T  3836648 tgaaactgtttgggagaacttatgaaaatagctta 3836682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 18349609 - 18349678
Alignment:
Q  28 gttttgtccttgttaatccaga-tccaattcaacttgttgcgatgcaaacatatctcattttattgttac 96  Q
    |||||||| ||||||||||  | || ||||||||||||||| || |||||||||  ||||||||||||||    
T  18349609 gttttgtctttgttaatcccaagtcaaattcaacttgttgcaatacaaacatattccattttattgttac 18349678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 529414 - 529382
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||||||||| |||||||||||||||||    
T  529414 ttcataagctctccaagatagcttatgaaaaca 529382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 48917377 - 48917409
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||||||||| |||||||||||||||||    
T  48917377 ttcataagctctccaagatagcttatgaaaaca 48917409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 27857463 - 27857391
Alignment:
Q  260 tgaaactgttttggagaacttatgaaaatagcttaaaacatgttcataagctctccatgatagcttatgaaaa 332  Q
    ||||||||||| ||||| |||||||||| | ||||  |||| | |||||||||||||||||||||||||||||    
T  27857463 tgaaactgtttgggagagcttatgaaaacaacttatgacatctccataagctctccatgatagcttatgaaaa 27857391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 9041431 - 9041499
Alignment:
Q  266 tgttttggagaacttatgaaaatagcttaaaacatgttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||||| |||| ||||||||||||  |||||| ||||||||||||| ||||||| || ||||||    
T  9041431 tgttttggagagcttacgaaaatagcttatgacatgtccataagctctccacgatagctaataaaaaca 9041499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Complemental strand, 1401146 - 1401116
Alignment:
Q  304 cataagctctccatgatagcttatgaaaaca 334  Q
    |||||||||||||||||||||||||||||||    
T  1401146 cataagctctccatgatagcttatgaaaaca 1401116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 24181716 - 24181688
Alignment:
Q  264 actgttttggagaacttatgaaaatagct 292  Q
    |||||||||||||||||||||||||||||    
T  24181716 actgttttggagaacttatgaaaatagct 24181688  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 31812044 - 31812076
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||||||||| |||||||||||||||||    
T  31812044 ttcataagctctccaagatagcttatgaaaaca 31812076  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 42646982 - 42646922
Alignment:
Q  274 agaacttatgaaaatagcttaaaacatgttcataagctctccatgatagcttatgaaaaca 334  Q
    |||||||||||||||||||||  |||||||||||||||||||| ||| | |||||||||||    
T  42646982 agaacttatgaaaatagcttatgacatgttcataagctctccaagatcgtttatgaaaaca 42646922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 38047848 - 38047918
Alignment:
Q  264 actgttttggagaacttatgaaaatagcttaaaacatgttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||| ||||| |||||| ||| | ||||  |||||| ||||||||||||| |||||||||||||||||    
T  38047848 actgtttgggagagcttatggaaacaacttatgacatgtccataagctctccaggatagcttatgaaaaca 38047918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 2568697 - 2568665
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||| |||||||||||||||||||||||||||    
T  2568697 ttcattagctctccatgatagcttatgaaaaca 2568665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 7808607 - 7808559
Alignment:
Q  264 actgttttggagaacttatgaaaatagcttaaaaca-tgttcataagct 311  Q
    ||||||| ||||| ||||||||||||||||| |||| ||||||||||||    
T  7808607 actgtttgggagagcttatgaaaatagcttataacattgttcataagct 7808559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 18543227 - 18543259
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||||||||| |||||||||||||||||    
T  18543227 ttcataagctctccaggatagcttatgaaaaca 18543259  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 11431780 - 11431826
Alignment:
Q  157 tagaatgcataactgagtcaaaatagtttaaaatgaatgctcatgct 203  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||    
T  11431780 tagaatgcataactgggtcaaaatagtttcaaatgtatgctcatgct 11431826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 1554977 - 1555028
Alignment:
Q  264 actgttttggagaacttatgaaaatagcttaaaacatgttcataagctctcc 315  Q
    |||||||  ||||| ||||||||||||||||  |||||||||||||||||||    
T  1554977 actgtttgagagaatttatgaaaatagcttatgacatgttcataagctctcc 1555028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 7730697 - 7730631
Alignment:
Q  268 ttttggagaacttatgaaaatagcttaaaacatgttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||| |||| | ||| | ||||  |||||| ||||||||||||| |||||||||||||||||    
T  7730697 ttttggagagcttaaggaaacaacttatgacatgtccataagctctccaggatagcttatgaaaaca 7730631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 2733365 - 2733328
Alignment:
Q  297 acatgttcataagctctccatgatagcttatgaaaaca 334  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  2733365 acatgttcataagctctctatgatatcttatgaaaaca 2733328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 11262789 - 11262826
Alignment:
Q  297 acatgttcataagctctccatgatagcttatgaaaaca 334  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  11262789 acatgtccataagctctccaggatagcttatgaaaaca 11262826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 6360748 - 6360776
Alignment:
Q  306 taagctctccatgatagcttatgaaaaca 334  Q
    |||||||||||||||||||||||||||||    
T  6360748 taagctctccatgatagcttatgaaaaca 6360776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 29913052 - 29913020
Alignment:
Q  261 gaaactgttttggagaacttatgaaaatagctt 293  Q
    |||||||||| ||||||||||||||||||||||    
T  29913052 gaaactgtttgggagaacttatgaaaatagctt 29913020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 42461359 - 42461307
Alignment:
Q  257 ttatgaaactgttttggagaacttatgaaaatagcttaaaacatgttcataag 309  Q
    |||||| ||||||| |||||||||||||||||||| ||  || ||||||||||    
T  42461359 ttatgagactgtttgggagaacttatgaaaatagcctatgacgtgttcataag 42461307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 50742867 - 50742899
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||||||||| |||||||||||||||||    
T  50742867 ttcataagctctccaggatagcttatgaaaaca 50742899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 2035409 - 2035470
Alignment:
Q  273 gagaacttatgaaaatagcttaaaacatgttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||||||||||||||||  |||| | ||||||||| ||  |||||||||||||||||    
T  2035409 gagaacttatgaaaatagcttatgacatatccataagctcacctggatagcttatgaaaaca 2035470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 11941364 - 11941316
Alignment:
Q  264 actgttttggagaacttatgaaaatagcttaaaaca-tgttcataagct 311  Q
    ||||||| ||||| ||||||||||||||||| |||| ||||||||||||    
T  11941364 actgtttgggagagcttatgaaaatagcttataacattgttcataagct 11941316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 24360581 - 24360609
Alignment:
Q  264 actgttttggagaacttatgaaaatagct 292  Q
    |||||||||||||||||||||||||||||    
T  24360581 actgttttggagaacttatgaaaatagct 24360609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 37842059 - 37842011
Alignment:
Q  280 tatgaaaatagcttaaaacatgttcataagctctccatgatagcttatg 328  Q
    |||||||||||||||  |  |||||||||||| ||||||||||||||||    
T  37842059 tatgaaaatagcttatgaagtgttcataagctgtccatgatagcttatg 37842011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 328
Target Start/End: Complemental strand, 43046767 - 43046703
Alignment:
Q  264 actgttttggagaacttatgaaaatagcttaaaacatgttcataagctctccatgatagcttatg 328  Q
    ||||||| |||||||||||||||| |||||   | ||||||||||| |||||| |||||||||||    
T  43046767 actgtttgggagaacttatgaaaacagcttttgaaatgttcataagttctccaagatagcttatg 43046703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 39921673 - 39921718
Alignment:
Q  277 acttatgaaaatagcttaaaacatgttcataagctctccatgatag 322  Q
    ||||||||||||||| ||  |||||||||||||||||||| |||||    
T  39921673 acttatgaaaatagcatattacatgttcataagctctccacgatag 39921718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 43875684 - 43875655
Alignment:
Q  305 ataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||||||||||||||||||||||||    
T  43875684 ataagctctccatgatagcttatgaaaaca 43875655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 405219 - 405191
Alignment:
Q  264 actgttttggagaacttatgaaaatagct 292  Q
    |||||||||||||||||||||||||||||    
T  405219 actgttttggagaacttatgaaaatagct 405191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 420858 - 420886
Alignment:
Q  264 actgttttggagaacttatgaaaatagct 292  Q
    |||||||||||||||||||||||||||||    
T  420858 actgttttggagaacttatgaaaatagct 420886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 21872282 - 21872334
Alignment:
Q  282 tgaaaatagcttaaaacatgttcataagctctccatgatagcttatgaaaaca 334  Q
    |||||||||||||  |||||| ||||| || |||| |||||||||||||||||    
T  21872282 tgaaaatagcttatgacatgtccataaactttccaggatagcttatgaaaaca 21872334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 24280750 - 24280718
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    |||||||||||||||||||||||||||| ||||    
T  24280750 ttcataagctctccatgatagcttatgacaaca 24280718  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 3050013 - 3049981
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    |||||||||||||||||||||||||||||||||    
T  3050013 ttcataagctctccatgatagcttatgaaaaca 3049981  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 750538 - 750485
Alignment:
Q  278 cttatgaaaatagcttaaaacatgttcataagctctcc-atgatagcttatgaa 330  Q
    |||||||||| |||||| ||||| | |||||||||||| |||||||||||||||    
T  750538 cttatgaaaacagcttataacatatccataagctctccaatgatagcttatgaa 750485  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 1801767 - 1801722
Alignment:
Q  266 tgttttggagaacttatgaaaatagcttaaaacatgttcataagct 311  Q
    ||||| |||||||||||||||| ||||||  |||||||||||||||    
T  1801767 tgtttgggagaacttatgaaaacagcttatgacatgttcataagct 1801722  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 32757488 - 32757525
Alignment:
Q  297 acatgttcataagctctccatgatagcttatgaaaaca 334  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  32757488 acatgtccataagctctccatgatatcttatgaaaaca 32757525  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 35379047 - 35379079
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||||||||| |||||||||||||||||    
T  35379047 ttcataagctctccaagatagcttatgaaaaca 35379079  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 36863656 - 36863688
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||||||||| |||||||||||||||||    
T  36863656 ttcataagctctccaagatagcttatgaaaaca 36863688  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 41170642 - 41170610
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    |||||||||||||||||||||| ||||||||||    
T  41170642 ttcataagctctccatgatagcatatgaaaaca 41170610  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 12851277 - 12851232
Alignment:
Q  264 actgttttggagaacttatgaaaatagcttaaaacatgttcataag 309  Q
    ||||||| ||| |||||||||||| |||||| ||||||||||||||    
T  12851277 actgtttgggaaaacttatgaaaacagcttataacatgttcataag 12851232  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 2107356 - 2107392
Alignment:
Q  298 catgttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  2107356 catgtccataagctctccaagatagcttatgaaaaca 2107392  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 12496769 - 12496685
Alignment:
Q  250 tatgcagttatgaaactgttttggagaacttatgaaaatagcttaaaacatgttcataagctctccatgatagcttatgaaaaca 334  Q
    |||||| || || ||||| || ||||| |||||||||  | ||||||||| ||  |||||||||| | |||||||||||||||||    
T  12496769 tatgcacttgtggaactggttcggagagcttatgaaatcaacttaaaacaagtctataagctctctaggatagcttatgaaaaca 12496685  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 25097425 - 25097393
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||||||||| |||||||||||||||||    
T  25097425 ttcataagctctccaggatagcttatgaaaaca 25097393  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 27028870 - 27028838
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    ||||||||||||||| |||||||||||||||||    
T  27028870 ttcataagctctccaagatagcttatgaaaaca 27028838  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 32507270 - 32507238
Alignment:
Q  302 ttcataagctctccatgatagcttatgaaaaca 334  Q
    |||||||| ||||||||||||||||||||||||    
T  32507270 ttcataagttctccatgatagcttatgaaaaca 32507238  T

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