View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_high_26 (Length: 254)
Name: NF2261_high_26
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28276702 - 28276922
Alignment:
| Q |
1 |
cacgaacaagctcattagaaaattgtttgattgtcatgtgaatttcaaagatgcaaaaagtctagggttccaaatattatgtataagttttttatgcctc |
100 |
Q |
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| T |
28276702 |
cacgaacaagctcattagaaaaatgtttgattgtcatgtgaatttcaaagatacaaaaagtctggggttccaaatattatgtataagttttttatgcctc |
28276801 |
T |
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| Q |
101 |
cttattatagatataaatgtac-ttttatatataattcttatgtaatgaacacttaatgaaaaagtggttagttaaattatttacccaattatctttcta |
199 |
Q |
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| T |
28276802 |
c-tattatagatataaatgtactttttatatataattcttatgtaatgaacacttaatgaaaaagt-gttagttaaattatttacccaattatctttcta |
28276899 |
T |
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| Q |
200 |
aacaaaagcaataaggtgaaagt |
222 |
Q |
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| T |
28276900 |
aacaaaagcaataaggtaaaagt |
28276922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 28296549 - 28296365
Alignment:
| Q |
40 |
gaatttcaaagatgcaaaaagtctagggttccaaatattatgtataagttttttatgcctccttattatagatataaatgtacttttatatataattctt |
139 |
Q |
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||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28296549 |
gaatttcaaagatacaaaaagtgtggggttccaaatattatgtataagttttctatgcctccttattatagatataaatgtacttttatatataactctt |
28296450 |
T |
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| Q |
140 |
atgtaatgaacacttaatgaaaaagtggttagttaaattatttacccaat--tatctttctaaacaaaagcaataaggtgaaagt |
222 |
Q |
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| T |
28296449 |
atgtaatgaacacttaatgaaaaagtggttagttaaattatttatccaattatatctttctaaacaaaagcaataaggtgaaagt |
28296365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28297455 - 28297408
Alignment:
| Q |
1 |
cacgaacaagctcattagaaaattgtttgattgtcatgtgaatttcaa |
48 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28297455 |
cacgaacaagctcattagaaaaatgtttgattgtcatgtgaatttcaa |
28297408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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