View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_high_27 (Length: 250)
Name: NF2261_high_27
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 15734408 - 15734641
Alignment:
| Q |
2 |
ttcgcgcattgatttcttctttctcaagaaacttgcaagcctcttctaatttggatccatttgcaccgtttggatcgaagaggcggtgaaaaaacttgtt |
101 |
Q |
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| T |
15734408 |
ttcgcgcattgatttcttctttctcaagaaacttgcaagcctcttctaatttggatccatttgcaccgtttggatcgaagagacggtgaaaaaacttgtt |
15734507 |
T |
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| Q |
102 |
tttcagaacttccatttcttgcaagtgttgtgatccgtaatggtaaggacctattgagatgttgcttggtatgtaggcttttggttcaacatttaacata |
201 |
Q |
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| T |
15734508 |
tttcagaacttccatttcttgcaagtgttgtgatccataatggtaaggacctattgagatgttgctaggtatgtaggcttttggttcaacatttaacata |
15734607 |
T |
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| Q |
202 |
tttggtgggactctatatatgcacacactctcat |
235 |
Q |
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| T |
15734608 |
tttggtgggactctatatatgcacacactctcat |
15734641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 235
Target Start/End: Original strand, 18057803 - 18058031
Alignment:
| Q |
7 |
gcattgatttcttctttctcaagaaacttgcaagcctcttctaatttggatccatttgcaccgtttggatcgaagaggcggtgaaaaaacttgtttttca |
106 |
Q |
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| T |
18057803 |
gcattgatctcttctttctcaagaaacttccaagcatcttctaatttggctccatttgcaccttttttatcaaagagacgctgaaagaacttgtttttga |
18057902 |
T |
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| Q |
107 |
gaacttccatttcttgcaagtgttgtgatccgtaatggtaaggacctattgagatgttgcttggtatgtaggcttttggttcaacatttaacatatttgg |
206 |
Q |
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| T |
18057903 |
gaatttccatttcttgtaggtgttgtgatccataatggtaaggacctattgagatattgttgggtatgtaggcttttggttctacacgtaacatgtttgg |
18058002 |
T |
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| Q |
207 |
tgggactctatatatgcacacactctcat |
235 |
Q |
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| T |
18058003 |
tgggaccctatatatggatacactctcat |
18058031 |
T |
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