View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_high_30 (Length: 247)
Name: NF2261_high_30
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 6497559 - 6497330
Alignment:
| Q |
1 |
tcccttcttcaaatctcaccttcttccttgtaagaggaagtccctttttaactttctttgtggcagattcaacacctctttccatcactactattcattc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
6497559 |
tcccttcttcaaatctcaccttcttccttgtaagaggaagtccctttttaactttctttgtagcagattcaacacctctttccataactactattcattc |
6497460 |
T |
|
| Q |
101 |
cattcgttctttttcgtcaaatgattcctttactaagtacacatttaagttagacaatgatcaaacatggattttatactcttccttgccaatcaagtta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6497459 |
cattcgttctttttcgtcaaatgattcctttactaagtacacatttaagttagacaatgatcaaacatggattttatactcttccttgccaatcaagtta |
6497360 |
T |
|
| Q |
201 |
agtcatggcctttctaagatcacttctgag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
6497359 |
agtcatggcctttctaagatcacttctgag |
6497330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 6461113 - 6461342
Alignment:
| Q |
1 |
tcccttcttcaaatctcaccttcttccttgtaagaggaagtccctttttaactttctttgtggcagattcaacacctctttccatcactactattcattc |
100 |
Q |
| |
|
|||||||| | || ||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||||| ||||||||||||||||| |
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| T |
6461113 |
tcccttctgccaacctcaccttcttccttgtaagaggaagtccttttttaactttctctgtgacagaatcaacacctctttctatcactactattcattc |
6461212 |
T |
|
| Q |
101 |
cattcgttctttttcgtcaaatgattcctttactaagtacacatttaagttagacaatgatcaaacatggattttatactcttccttgccaatcaagtta |
200 |
Q |
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||||| ||| ||||| ||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6461213 |
cattcattccttttcttcaaatgataccttaactaagtacacatttaagtttgacaatgatcaaacatggattttatactcttccttgccaatcaagtta |
6461312 |
T |
|
| Q |
201 |
agtcatggcctttctaagatcacttctgag |
230 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |
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| T |
6461313 |
agtcatggcctttctgagatcacatctgag |
6461342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 230
Target Start/End: Original strand, 13035070 - 13035267
Alignment:
| Q |
33 |
agaggaagtccctttttaactttctttgtggcagattcaacacctctttccatcactactattcattccattcgttctttttcgtcaaatgattccttta |
132 |
Q |
| |
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||||||||||||||||| ||| | | ||| || | |||||||||||||||| | || |||||| |||||| ||| ||||| ||||||||| | ||| |
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| T |
13035070 |
agaggaagtccctttttgactgtttctgtaacaaaaccaacacctctttccatttccaccattcatgccattctttccttttcttcaaatgataacctta |
13035169 |
T |
|
| Q |
133 |
ctaagtacacatttaagttagacaatgatcaaacatggattttatactcttccttgccaatcaagttaagtcatggcctttctaagatcacttctgag |
230 |
Q |
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| || | ||| ||| | | ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
13035170 |
ccaaattcacctttcatcttaacaatgatcaagcatggatcctatacgcttccttgccaatcaagttaagtcatgaactttctgagatcacttctgag |
13035267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 6472364 - 6472573
Alignment:
| Q |
21 |
ttcttccttgtaagaggaagtccctttttaactttctttgtggcagattcaacacctctttccatcactactattcattccattcgttctttttcgtcaa |
120 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||| | | ||| || | |||||||||||||||| | || |||||| |||||| ||| || || |||| |
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| T |
6472364 |
ttcttccttgttagaggaagtccctttctgactgtttctgtaacaaaaccaacacctctttccatttccaccattcatgccattctttccttctcttcaa |
6472463 |
T |
|
| Q |
121 |
atgattcctttactaagtacacatttaagttagacaatgatcaaacatggattttatactcttccttgccaatcaagttaagtcatggcctttctaagat |
220 |
Q |
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|||| | |||| || | ||| ||| | | ||||||||||||||||||| ||||| |||||| ||| |||||| ||||||||| |||||| |||| |
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| T |
6472464 |
atgaaaaccttaccaaattcacctttcatcttaacaatgatcaaacatggatcctatacgcttcctcgccgatcaagctaagtcatgaactttctgagat |
6472563 |
T |
|
| Q |
221 |
cacttctgag |
230 |
Q |
| |
|
|||||||||| |
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|
| T |
6472564 |
cacttctgag |
6472573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 6515556 - 6515608
Alignment:
| Q |
155 |
caatgatcaaacatggattttatactcttccttgccaatcaagttaagtcatg |
207 |
Q |
| |
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|||| ||||||||||| |||||||| |||||| ||||||||||| ||||||| |
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| T |
6515556 |
caataatcaaacatgggttttatacacttcctcaccaatcaagttgagtcatg |
6515608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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