View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2261_high_8 (Length: 454)

Name: NF2261_high_8
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2261_high_8
NF2261_high_8
[»] chr2 (12 HSPs)
chr2 (136-421)||(6860370-6860659)
chr2 (249-370)||(12555428-12555549)
chr2 (375-441)||(6860298-6860364)
chr2 (11-64)||(6860695-6860748)
chr2 (250-286)||(29894391-29894427)
chr2 (358-441)||(10943321-10943406)
chr2 (358-441)||(10949190-10949275)
chr2 (142-291)||(28589913-28590063)
chr2 (250-286)||(24543218-24543254)
chr2 (250-286)||(36365045-36365081)
chr2 (248-347)||(10977701-10977800)
chr2 (147-210)||(37140621-37140684)
[»] chr4 (15 HSPs)
chr4 (136-441)||(1479186-1479494)
chr4 (139-441)||(6969457-6969765)
chr4 (136-417)||(49407030-49407313)
chr4 (136-291)||(35096908-35097064)
chr4 (137-292)||(9633057-9633213)
chr4 (145-397)||(17283486-17283740)
chr4 (138-291)||(16889142-16889295)
chr4 (250-292)||(1394124-1394166)
chr4 (250-286)||(19315960-19315996)
chr4 (316-442)||(1310951-1311079)
chr4 (250-291)||(37857040-37857081)
chr4 (136-278)||(1311155-1311298)
chr4 (250-301)||(5124650-5124701)
chr4 (224-291)||(23059384-23059452)
chr4 (250-282)||(43989328-43989360)
[»] chr7 (12 HSPs)
chr7 (137-439)||(31956949-31957254)
chr7 (136-321)||(9892708-9892894)
chr7 (140-345)||(36677563-36677769)
chr7 (140-377)||(20492394-20492635)
chr7 (138-291)||(17852344-17852498)
chr7 (250-292)||(21118394-21118436)
chr7 (251-292)||(12980729-12980770)
chr7 (140-291)||(9451460-9451612)
chr7 (138-373)||(10325024-10325259)
chr7 (224-343)||(717440-717560)
chr7 (250-286)||(23820528-23820564)
chr7 (251-283)||(40901876-40901908)
[»] chr1 (13 HSPs)
chr1 (136-377)||(33315069-33315302)
chr1 (136-291)||(17321875-17322031)
chr1 (136-292)||(2114355-2114512)
chr1 (250-377)||(3601291-3601418)
chr1 (136-291)||(12539116-12539272)
chr1 (225-311)||(44839901-44839988)
chr1 (250-337)||(2536552-2536639)
chr1 (250-286)||(6784283-6784319)
chr1 (250-286)||(11351667-11351703)
chr1 (251-347)||(51080743-51080839)
chr1 (250-286)||(20639595-20639631)
chr1 (136-377)||(32544299-32544538)
chr1 (138-291)||(27877701-27877855)
[»] chr8 (9 HSPs)
chr8 (140-377)||(9808675-9808913)
chr8 (276-441)||(24329333-24329500)
chr8 (138-291)||(26951397-26951551)
chr8 (250-292)||(26440805-26440847)
chr8 (254-346)||(11911438-11911531)
chr8 (249-286)||(18481238-18481275)
chr8 (251-311)||(7251086-7251146)
chr8 (136-176)||(11911341-11911381)
chr8 (106-134)||(11911348-11911376)
[»] chr5 (10 HSPs)
chr5 (136-338)||(33367872-33368074)
chr5 (138-291)||(30304821-30304975)
chr5 (288-338)||(40200353-40200403)
chr5 (258-343)||(29985376-29985461)
chr5 (250-286)||(41197426-41197462)
chr5 (250-285)||(36779472-36779507)
chr5 (136-203)||(40200246-40200313)
chr5 (250-292)||(34520-34562)
chr5 (138-196)||(24870526-24870584)
chr5 (250-286)||(30376497-30376533)
[»] chr3 (12 HSPs)
chr3 (140-291)||(1017585-1017737)
chr3 (136-291)||(10346439-10346594)
chr3 (138-291)||(26730828-26730982)
chr3 (250-286)||(8705717-8705753)
chr3 (250-286)||(9057604-9057640)
chr3 (250-286)||(36684910-36684946)
chr3 (252-286)||(45736471-45736505)
chr3 (250-347)||(20916353-20916450)
chr3 (250-347)||(20925315-20925412)
chr3 (250-286)||(51976765-51976801)
chr3 (250-291)||(38998907-38998948)
chr3 (250-286)||(49758988-49759024)
[»] scaffold0151 (1 HSPs)
scaffold0151 (136-291)||(21306-21461)
[»] chr6 (5 HSPs)
chr6 (250-286)||(4513077-4513113)
chr6 (250-286)||(942698-942734)
chr6 (138-291)||(13104327-13104481)
chr6 (251-291)||(27862151-27862191)
chr6 (250-286)||(19047092-19047128)
[»] scaffold0010 (1 HSPs)
scaffold0010 (138-291)||(255323-255477)
[»] scaffold0041 (1 HSPs)
scaffold0041 (251-283)||(48110-48142)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 136 - 421
Target Start/End: Complemental strand, 6860659 - 6860370
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaat-atatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcg 234  Q
    ||||||||||||||||||| ||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6860659 attcattgcatttcattagctaaaatgtatcaaattacatgaaggagcattatctataatataggagctaggatttaatagtgctgtcagaactaactcg 6860560  T
Q  235 tgagtgacc-catctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaact 333  Q
    ||||||| | ||| || ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  6860559 tgagtgatcgcatttatttgcctcctgttgaactcgacatgagagttttgaaatctattttgtaacaatcgtctagtatcagaaattatacaaccaaact 6860460  T
Q  334 cactattatcatcttcatcggaattaacatgatcaacaactc--ttagaatccatagcaaagtccatgttgttgaattgaaggtctaaga 421  Q
    ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||    
T  6860459 cactattatcatcttcatcagaattaacatgatcaacaactcttttagaatccatagcaaagtccatgttgtcgaattgaaggtctaaga 6860370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 249 - 370
Target Start/End: Original strand, 12555428 - 12555549
Alignment:
Q  249 acttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcactattatcatctt 348  Q
    ||||||||||||||||||| |||||||||||||||||| || || ||||||||  ||||||||||| | || |||||||||||||| ||||||||||||     
T  12555428 acttgcctcctattgaacttgacatgagagttctgaaaactgttatgtaacaactgtctacaatcaaatataatacaaccaaactcgctattatcatcta 12555527  T
Q  349 catcggaattaacatgatcaac 370  Q
     ||| |||||||| ||||||||    
T  12555528 tatctgaattaacttgatcaac 12555549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 375 - 441
Target Start/End: Complemental strand, 6860364 - 6860298
Alignment:
Q  375 cttagaatccatagcaaagtccatgttgttgaattgaaggtctaagatccattgcagagttgtgtgt 441  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  6860364 cttagaatccatagcaaagtccatgttgtcgaattgaaggtctaagacccattacagagctgtgtgt 6860298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 6860748 - 6860695
Alignment:
Q  11 caaagggagggtgagtattccaccaacttgggtacaaaacaattcatgccctta 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6860748 caaagggagggtgagtattccaccaacttgggtacaaaacaattcatcccctta 6860695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 29894391 - 29894427
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||||||||||||||||||||    
T  29894391 cttgcctcctattgaactcgacatgagagttctgaaa 29894427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 441
Target Start/End: Complemental strand, 10943406 - 10943321
Alignment:
Q  358 taacatgatcaacaactc--ttagaatccatagcaaagtccatgttgttgaattgaaggtctaagatccattgcagagttgtgtgt 441  Q
    ||||||||||||||||||  |||||||  |  || |||||||  |||||||||||||||||||| | ||||||||||| |||||||    
T  10943406 taacatgatcaacaactcatttagaataaagggcgaagtccacattgttgaattgaaggtctaacacccattgcagagctgtgtgt 10943321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 441
Target Start/End: Complemental strand, 10949275 - 10949190
Alignment:
Q  358 taacatgatcaacaactc--ttagaatccatagcaaagtccatgttgttgaattgaaggtctaagatccattgcagagttgtgtgt 441  Q
    ||||||||||||||||||  |||||||  |  || |||||||  |||||||||||||||||||| | ||||||||||| |||||||    
T  10949275 taacatgatcaacaactcatttagaataaagggcgaagtccacattgttgaattgaaggtctaacacccattgcagagctgtgtgt 10949190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 291
Target Start/End: Original strand, 28589913 - 28590063
Alignment:
Q  142 tgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtgagtga 241  Q
    ||||||||||||| |||||| | ||||||| ||  |||   |||||| || | || || |||||||||  |||| |||| | |||||||||||||||  |    
T  28589913 tgcatttcattagataaaatatgccaaatacatttaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtgagcta 28590012  T
Q  242 ccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    ||| || | |||||||||   ||||||| ||||||||||||||||||||||    
T  28590013 ccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctat 28590063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 24543254 - 24543218
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    ||||| |||||||||||||||||||||||||||||||    
T  24543254 cttgcatcctattgaactcgacatgagagttctgaaa 24543218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 36365081 - 36365045
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    ||||||||||||||||||||||||| |||||||||||    
T  36365081 cttgcctcctattgaactcgacatgggagttctgaaa 36365045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 347
Target Start/End: Complemental strand, 10977800 - 10977701
Alignment:
Q  248 tacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcactattatcatct 347  Q
    |||||||||| | |||||||| |||||||||||||| |||||||| | || || | || ||||| ||| ||| ||||| ||||| |||||  ||||||||    
T  10977800 tacttgcctcatgttgaactcaacatgagagttctggaatctattctctagcagttgtttacaagcagcaataatacatccaaaatcactgctatcatct 10977701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 37140684 - 37140621
Alignment:
Q  147 ttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggattt 210  Q
    |||||||| ||||||||||||||||||||| |  ||||| ||||||| || |||||| ||||||    
T  37140684 ttcattagctaaaatgtaccaaatatatgaggatgcatcctctataacatgggagctgggattt 37140621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 136 - 441
Target Start/End: Original strand, 1479186 - 1479494
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||| | |||||| ||||||||| ||    
T  1479186 attcattgcatttcattggttaaaatgtgccaaatatatgaaggagcatcatctataatatgtgagctaggatttaatggggctgtccgagctaacttgt 1479285  T
Q  236 gagtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactc 334  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||| ||    
T  1479286 gagtgaccccatttacttgcctcctattgaactcgatatgagagttctgaaatctattttgtaacaatcatctataagcagaaattatacaaccaaagtc 1479385  T
Q  335 actattatcatcttcatcggaattaacatgatcaacaactc--ttagaatccatagcaaagtccatgttgttgaattgaaggtctaagatccattgcaga 432  Q
    |||||||||||||||||  ||||||||||||||||||||||  |||||||| | ||| ||||||| ||||| ||||||||||||| ||||||||||||||    
T  1479386 actattatcatcttcataagaattaacatgatcaacaactcttttagaatctagagcgaagtccacgttgtcgaattgaaggtctgagatccattgcaga 1479485  T
Q  433 gttgtgtgt 441  Q
    |||||||||    
T  1479486 gttgtgtgt 1479494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 139 - 441
Target Start/End: Complemental strand, 6969765 - 6969457
Alignment:
Q  139 cattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctat---aatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    |||||||||||| ||| ||||||||  |||||| |||||||||||||||||||   ||||| ||| |||||| |||  || |||||| ||||||||||||    
T  6969765 cattgcatttcaatagctaaaatgtgtcaaatacatgaaggagcatcatctattgaaatatgggatctaggagttagcagggctgtctgagctaactcgt 6969666  T
Q  236 gagtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactc 334  Q
    ||| ||||| || ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  6969665 gagcgaccccatttacttacctcttattgaaatcgacatgagagttctgaaatctattttgtaacaattgtctacaagcagaaattatacaaccaaactc 6969566  T
Q  335 actattatcatcttcatcggaattaacatgatcaacaac--tcttagaatccatagcaaagtccatgttgttgaattgaaggtctaagatccattgcaga 432  Q
    |||||||||||||  ||| ||||||||||||||||||||  | |||||||||| ||||||||| | ||||| ||||||||||||  ||| ||||||||||    
T  6969565 actattatcatctatatcagaattaacatgatcaacaacttttttagaatccagagcaaagtctacgttgtcgaattgaaggtccgagacccattgcaga 6969466  T
Q  433 gttgtgtgt 441  Q
    |||||||||    
T  6969465 gttgtgtgt 6969457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 136 - 417
Target Start/End: Original strand, 49407030 - 49407313
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    |||| |||||||||||||||||||||||  |||||||||||| || ||||||||||||| |  |||||||||||| |    | || |  | |||||||||    
T  49407030 attcgttgcatttcattagttaaaatgtgtcaaatatatgaaagaacatcatctataatgtgagagctaggatttgacgtggttgcctaaactaactcgt 49407129  T
Q  236 gagtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactc 334  Q
    ||| ||||| || ||||||| |||||||||||| ||||| |||||| ||||||||| ||| |||||||| |||| |  || ||| |||||||||||||||    
T  49407130 gagcgaccctatttacttgcttcctattgaacttgacataagagttatgaaatctagtttataacaatc-tctataggcataaagtatacaaccaaactc 49407228  T
Q  335 actattatcatcttcatcggaattaacatgatcaacaactc--ttagaatccatagcaaagtccatgttgttgaattgaaggtct 417  Q
    |||||||| |||| ||   ||||||||||||| ||||||||  ||||||||||  || |||||||  ||||||||||||| ||||    
T  49407229 actattataatctacaatagaattaacatgattaacaactcttttagaatccagtgcgaagtccacattgttgaattgaaagtct 49407313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 136 - 291
Target Start/End: Complemental strand, 35097064 - 35096908
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||  ||||||||||||||     |||||||||  |||| | |||| ||||||||||||    
T  35097064 attcattgcatttcattagctaaaatgtgccaaatacatgaaggtacatcatctataatacgatggctaggattagatagggttgtctgagctaactcgt 35096965  T
Q  236 gagtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |||  |||| || | ||||||| ||||||||||||||||||||||||||||||||||    
T  35096964 gagcaaccctatttgcttgccttctattgaactcgacatgagagttctgaaatctat 35096908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 137 - 292
Target Start/End: Complemental strand, 9633213 - 9633057
Alignment:
Q  137 ttcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtg 236  Q
    ||||||||||   ||||||| |||||| ||||||| |||||||  |  |||||||||||| || ||||| |||  ||||   |||| ||||||||||||     
T  9633213 ttcattgcatacaattagttgaaatgtcccaaatacatgaaggtacgccatctataatatgggggctagtattggataggattgtctgagctaactcgta 9633114  T
Q  237 agtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctatt 292  Q
    |  ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  9633113 atcgaccccattcacttgcctcctattgaactcgacatgagagttctgaaatctatt 9633057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 397
Target Start/End: Original strand, 17283486 - 17283740
Alignment:
Q  145 atttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtgagtgaccc 244  Q
    |||||| ||| ||||||||  |||||| |||||||  |||||||||||| || || |||| ||||  |||| | |||  ||| |||||||||||| ||||    
T  17283486 atttcaatagctaaaatgtgacaaatacatgaaggtacatcatctataacatggg-gctatgattggatagagttgtttgagttaactcgtgagtcaccc 17283584  T
Q  245 -atctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcactattatc 343  Q
     ||    ||||||||||||||||||||||| ||||||||||||||||||   ||| | | || ||||| || | || ||||||||||||||  ||||||     
T  17283585 cattcgtttgcctcctattgaactcgacataagagttctgaaatctattgactaatagttgtttacaagcaaatatgatacaaccaaactcgttattatt 17283684  T
Q  344 atcttcatcggaattaacatgatcaacaactc--ttagaatccatagcaaagtcca 397  Q
    |||| |||  ||||| ||| ||||||||||||  |||||||| | |||||||||||    
T  17283685 atctacatgtgaattcacaagatcaacaactcttttagaatcaagagcaaagtcca 17283740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 291
Target Start/End: Complemental strand, 16889295 - 16889142
Alignment:
Q  138 tcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtga 237  Q
    |||||||||||| |||| |||||| | ||||||| ||| |||  ||||||| || | || ||||||||||||  |||| |||| | ||||||||||||||    
T  16889295 tcattgcatttcgttagataaaatatgccaaatacatgtaggtacatcatcaatcacatgggagctaggattagatagggctg-ctgagctaactcgtga 16889197  T
Q  238 gtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |  |||| || | ||||||||| | ||||||| ||||||||||||||||||||||    
T  16889196 gctaccctatttgcttgcctccgactgaactcaacatgagagttctgaaatctat 16889142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 1394166 - 1394124
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaatctatt 292  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  1394166 cttgcctcctattgaactcgacatgagagttctgaaaactatt 1394124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 19315960 - 19315996
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||||||||||||||||||||    
T  19315960 cttgcctcctattgaactcgacatgagagttctgaaa 19315996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 442
Target Start/End: Complemental strand, 1311079 - 1310951
Alignment:
Q  316 aaattatacaaccaaactcactattatcatcttcatcggaattaacatgatcaacaactc--ttagaatccatagcaaagtccatgttgttgaattgaag 413  Q
    |||||||| ||||||||||| ||   |||| | ||||  |||||||||||||||||||||  |||||||| |  || || |||| |||||| ||||||||    
T  1311079 aaattataaaaccaaactcattaaagtcatttacatcataattaacatgatcaacaactcgtttagaatcaaaggcgaaatccacgttgttaaattgaag 1310980  T
Q  414 gtctaagatccattgcagagttgtgtgtg 442  Q
    |||||| |  ||||| |||| ||||||||    
T  1310979 gtctaacactcattggagagctgtgtgtg 1310951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 37857040 - 37857081
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  37857040 cttgcctcctgttgaactcaacatgagagttctgaaatctat 37857081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 1311298 - 1311155
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    ||||||| ||||| ||||| ||||||||  |||||  || |||| ||| ||||||||||||   || || |||||||||  | |||| || |||||||||    
T  1311298 attcatttcattttattaggtaaaatgtttcaaatgcataaaggtgcaccatctataatatgaaagttaagatttaataaggttgtctgaactaactcgt 1311199  T
Q  236 gagtgacc-catctacttgcctcctattgaactcgacatgagag 278  Q
    ||| |||| |||  |||| ||||||||| ||||| |||||||||    
T  1311198 gagcgacctcattgacttacctcctattaaactcaacatgagag 1311155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 5124650 - 5124701
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaa 301  Q
    ||||||||| |||||||||||||| ||||||||||||  ||||||| |||||    
T  5124650 cttgcctccgattgaactcgacattagagttctgaaaattattttgaaacaa 5124701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 23059384 - 23059452
Alignment:
Q  224 gagctaactcgtgagtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |||||||||||||||  |||| || | |||||||||   ||||||| ||||||||||||||||||||||    
T  23059384 gagctaactcgtgagctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctat 23059452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 43989328 - 43989360
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttct 282  Q
    ||||||||||||||||||||||||||| |||||    
T  43989328 cttgcctcctattgaactcgacatgagcgttct 43989360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 137 - 439
Target Start/End: Original strand, 31956949 - 31957254
Alignment:
Q  137 ttcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtg 236  Q
    ||||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||| |||||||| |  |  ||  || ||||| |||    
T  31956949 ttcattgcatttcattagttaaaatgtgccaaatacatgagggtgcatcatctataatataggagctatgatttaatgggacaatctcagttaacttgtg 31957048  T
Q  237 agtga-cccatctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactca 335  Q
     | || |||||  ||||||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||||||  |||||| ||||||||| |||||    
T  31957049 tgcgatcccattaacttgcctcctattgaattcgacatgatagttctgaaaactattctgtaacaatcgtctacaaatagaaataatacaaccatactca 31957148  T
Q  336 ctattatcatcttcatcggaattaacatgatcaacaac--tcttagaatccatagcaaagtccatgttgttgaattgaaggtctaagatccattgcagag 433  Q
    ||||| |||||| ||||  ||||||| |||||||||||  | |||||||| |   |||||||||  |||| ||||||||||||||| | |||||| ||||    
T  31957149 ctattgtcatctacatcaaaattaacgtgatcaacaactgttttagaatcaaggacaaagtccacattgtcgaattgaaggtctaacacccattgtagag 31957248  T
Q  434 ttgtgt 439  Q
     |||||    
T  31957249 ctgtgt 31957254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 136 - 321
Target Start/End: Original strand, 9892708 - 9892894
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    |||||||| ||||||||||||||||||| | ||| |||| |||||||||||||| |||||| | |||||||| ||||| |   |||  ||||||||||||    
T  9892708 attcattgtatttcattagttaaaatgtgctaaaaatataaaggagcatcatctgtaatatggaagctaggaattaatgggattgtatgagctaactcgt 9892807  T
Q  236 gagtga-cccatctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaatta 321  Q
    ||  || ||||| ||||| || | |||| ||||||||||||||||||| |||||||| ||||||||||||| ||||| || ||||||    
T  9892808 gaacgaccccatttacttaccccatattaaactcgacatgagagttctaaaatctatattgtaacaatcgtttacaagcataaatta 9892894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 345
Target Start/End: Complemental strand, 36677769 - 36677563
Alignment:
Q  140 attgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtgagt 239  Q
    ||||||||||||||| ||||||||  |||||| |||| ||| |||||||||||| ||  ||||||||||| ||||| ||| |  ||||||||| ||||||    
T  36677769 attgcatttcattagctaaaatgtgtcaaatacatgagggaacatcatctataacatgcgagctaggattaaatagggctatatgagctaacttgtgagt 36677670  T
Q  240 gaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcacta 338  Q
    ||||| ||    | |||| || |||||||||||||||||||  ||||| |||||   ||||||| |||||||  || | || |||||||||||||| |||    
T  36677669 gaccctattcgttcgccttctgttgaactcgacatgagagtgttgaaaactattaactaacaattgtctacatgcatatatgatacaaccaaactcgcta 36677570  T
Q  339 ttatcat 345  Q
     ||||||    
T  36677569 ctatcat 36677563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 377
Target Start/End: Complemental strand, 20492635 - 20492394
Alignment:
Q  140 attgcatttcattagttaaaatgtaccaaatatatgaagg---agcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtg 236  Q
    ||||||||||||||||||||||||  ||||||  ||||||   | ||||| ||||||||| || | ||| |||  |||| |||| | ||||||| |||||    
T  20492635 attgcatttcattagttaaaatgtgtcaaatacgtgaaggtatatcatcaactataatatgggggttagaattggatagggctgcctgagctaattcgtg 20492536  T
Q  237 agtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactca 335  Q
    || ||||| ||   ||||||||||||| ||||||| ||||||||||| |||||||||   ||| || ||| ||||| |||| || |||||||||| |||     
T  20492535 agcgaccctattcgcttgcctcctattaaactcgagatgagagttctaaaatctattaactaataaccgtttacaaacagatataatacaaccaagctcg 20492436  T
Q  336 ctattatcatcttcatcggaattaacatgatcaacaactctt 377  Q
    |||| ||||||| |||  ||||| | |  |||||||||||||    
T  20492435 ctatcatcatctacatgtgaatttataaaatcaacaactctt 20492394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 291
Target Start/End: Complemental strand, 17852498 - 17852344
Alignment:
Q  138 tcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtga 237  Q
    ||||||||||||||||| |||||| | ||||||| ||| |||  ||||||| || | || || |||| ||||  |||| |||| | ||||||||||||||    
T  17852498 tcattgcatttcattagataaaatatgccaaatacatgtaggtacatcatcaatcacatgggggctaagattagatagggctgcctgagctaactcgtga 17852399  T
Q  238 gtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |  |||| || | |||||||||   ||||||| |||||||| |||||||||||||    
T  17852398 gctaccctatttgcttgcctccggctgaactcaacatgagaattctgaaatctat 17852344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 21118436 - 21118394
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaatctatt 292  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  21118436 cttgcctcctattgaactcgacatgagagttctgaaaactatt 21118394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 12980770 - 12980729
Alignment:
Q  251 ttgcctcctattgaactcgacatgagagttctgaaatctatt 292  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  12980770 ttgcctcctgttgaactcgacatgagagttctgaaatctatt 12980729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 291
Target Start/End: Complemental strand, 9451612 - 9451460
Alignment:
Q  140 attgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtgagt 239  Q
    ||||||||||||||| |||||| |  |||||| ||| |||  ||||||| ||||||| || |||||||||  | || |||| | ||  |||||||||||     
T  9451612 attgcatttcattaggtaaaatatgtcaaatacatgtaggtacatcatcaataatatgggggctaggattagacagggctgcctgatttaactcgtgagc 9451513  T
Q  240 gaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
     |||| || |  ||| ||||| |||||||||| ||||||||||||||||||||    
T  9451512 taccctatttgtttgtctcctgttgaactcgatatgagagttctgaaatctat 9451460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 373
Target Start/End: Original strand, 10325024 - 10325259
Alignment:
Q  138 tcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtga 237  Q
    |||||| |||||||||| ||||||||  | |||| | || ||  |||||||||||| || ||| |||||||| ||| | | |||  |||||||||| |||    
T  10325024 tcattgtatttcattagctaaaatgtgtctaatacacgagggtacatcatctataacatgggatctaggattaaatggggttgtt-gagctaactcatga 10325122  T
Q  238 gtgacc-catctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcac 336  Q
    | |||| |||    |||||||||||| ||||||||||||||||| |  || | |||  |||||||| |||||||| || | |  ||||||| ||||| ||    
T  10325123 gcgacctcattcgtttgcctcctattaaactcgacatgagagttgtttaaacaattaagtaacaattgtctacaagcatatacgatacaactaaactaac 10325222  T
Q  337 tattatcatcttcatcggaattaacatgatcaacaac 373  Q
    || ||||||||  ||| ||||| |||| |||||||||    
T  10325223 tactatcatctatatctgaatttacataatcaacaac 10325259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 343
Target Start/End: Complemental strand, 717560 - 717440
Alignment:
Q  224 gagctaactcgtgagtga-cccatctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattat 322  Q
    |||||||||||| ||||| |||||   |||| |||||||| ||||| ||||||||||| ||||||||| |||| || ||| ||||||| |||   || ||    
T  717560 gagctaactcgtaagtgatcccattagcttgtctcctattaaactcaacatgagagttttgaaatctactttggaataattgtctacattcaactataat 717461  T
Q  323 acaaccaaactcactattatc 343  Q
    ||| ||||| |||||| ||||    
T  717460 acatccaaattcactactatc 717440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 23820564 - 23820528
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    ||||||||||||||||||||| |||||||||||||||    
T  23820564 cttgcctcctattgaactcgatatgagagttctgaaa 23820528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 40901876 - 40901908
Alignment:
Q  251 ttgcctcctattgaactcgacatgagagttctg 283  Q
    |||||||||||| ||||||||||||||||||||    
T  40901876 ttgcctcctattcaactcgacatgagagttctg 40901908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 136 - 377
Target Start/End: Complemental strand, 33315302 - 33315069
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    |||||||| | || ||||||||||||||  |||||| |||||||||||||||||||||||| ||||||||||  |             ||||||||||||    
T  33315302 attcattgtactttattagttaaaatgtgtcaaatacatgaaggagcatcatctataatatgggagctaggacct-------------gagctaactcgt 33315216  T
Q  236 gagtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaat-----cgtctacaatcagaaattatacaacca 329  Q
    ||  ||||| || ||||| ||||||||| |||||||||||| |||| |||||||||||||||||||||     |||||||||  |||||||||||| ||     
T  33315215 gaacgaccccatttacttacctcctattaaactcgacatgaaagtt-tgaaatctattttgtaacaatgcaatcgtctacaagtagaaattatacagccg 33315117  T
Q  330 aactcactattatcatcttcatcggaattaacatgatcaacaactctt 377  Q
    |||||||||||||| |||||||  |||  |||||| ||||||||||||    
T  33315116 aactcactattatcgtcttcattagaacaaacatggtcaacaactctt 33315069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 136 - 291
Target Start/End: Complemental strand, 17322031 - 17321875
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    |||||||||| |||||||| ||||||||  || ||| |||| ||  ||||||| ||||||| || |||||||||  |||| ||||   ||||||||||||    
T  17322031 attcattgcaattcattagctaaaatgtgtcacatacatgagggtacatcatcaataatatgggggctaggattagatagggctgcttgagctaactcgt 17321932  T
Q  236 gagtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |||  |||| || | |||||||||| |||||||||||||||||||||||||||||||    
T  17321931 gagctaccctatttgcttgcctcctgttgaactcgacatgagagttctgaaatctat 17321875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 136 - 292
Target Start/End: Complemental strand, 2114512 - 2114355
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    |||||||||||||||||||||||||||| ||||||| || ||||   ||||||||||| |  || |||||||||  |||| |||| |  |||||| ||||    
T  2114512 attcattgcatttcattagttaaaatgtgccaaatacataaaggtagatcatctataacacgggggctaggattggatagggctgcctaagctaattcgt 2114413  T
Q  236 gagtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctatt 292  Q
    ||| ||||| ||   ||| | |||| ||||||||||||||||||||||||||||||||    
T  2114412 gagcgaccccattcgcttccttcctgttgaactcgacatgagagttctgaaatctatt 2114355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 377
Target Start/End: Original strand, 3601291 - 3601418
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcactattatcatcttc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||| ||| || ||||| || | || |||||||||| ||  |||| ||||||| |    
T  3601291 cttgcctcctattgaactcgacatgagagttctgaaatctattaactaataattgtttacaagcaaatatgatacaaccaaccttgctatcatcatctac 3601390  T
Q  350 atcggaattaacatgatcaacaactctt 377  Q
    ||  ||||| |||  |||||||||||||    
T  3601391 atatgaattcacaaaatcaacaactctt 3601418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 291
Target Start/End: Complemental strand, 12539272 - 12539116
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    ||||||||||||||||||| |||||| |  |||||| ||| |||  ||||||| ||||||| || |||||||||  | |  ||||    |||||||||||    
T  12539272 attcattgcatttcattagctaaaatatgtcaaataaatgtaggtacatcatcaataatatgggggctaggattagacatggctgcatcagctaactcgt 12539173  T
Q  236 gagtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |||  | || || | |||||||||| |||||||||||||||||||||||||||||||    
T  12539172 gagctatcctatttgcttgcctcctgttgaactcgacatgagagttctgaaatctat 12539116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 44839901 - 44839988
Alignment:
Q  225 agctaactcgtgagtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaa 311  Q
    ||||||||| |||| ||||| ||  |||||||||||||||||||||||||||||||||||||| ||||| |  |||||| ||||||||    
T  44839901 agctaactcatgagcgaccccattaacttgcctcctattgaactcgacatgagagttctgaaaactattgtcaaacaattgtctacaa 44839988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 2536552 - 2536639
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcact 337  Q
    ||||||||||||||||||||||||||||||||||||| ||| | |  |||| | || |||||||| | || ||||| |||||||||||    
T  2536552 cttgcctcctattgaactcgacatgagagttctgaaaactaatctcaaacagttgtttacaatcatacataatacatccaaactcact 2536639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 6784319 - 6784283
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||||||||||||||||||||    
T  6784319 cttgcctcctattgaactcgacatgagagttctgaaa 6784283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 11351667 - 11351703
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||||||||||||||||||||    
T  11351667 cttgcctcctattgaactcgacatgagagttctgaaa 11351703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 347
Target Start/End: Original strand, 51080743 - 51080839
Alignment:
Q  251 ttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcactattatcatct 347  Q
    |||||||||||| ||||||||||||||||| ||||| ||||  || |||||  |||||||  ||| ||| ||||||||||  ||||||| |||||||    
T  51080743 ttgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaaccaagttcactatcatcatct 51080839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 20639631 - 20639595
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    ||||||||||||||||||| |||||||||||||||||    
T  20639631 cttgcctcctattgaactcaacatgagagttctgaaa 20639595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 377
Target Start/End: Original strand, 32544299 - 32544538
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    |||||||||||||||||||||||||||| ||||||| || ||||     |||||| || |  |  |||||||||  |||| | | || ||||||||||||    
T  32544299 attcattgcatttcattagttaaaatgtgccaaatacattaagg---tacatctacaaaacggaggctaggattggatagggatatctgagctaactcgt 32544395  T
Q  236 gagtgacc-catctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactc 334  Q
    ||  |||| |||   ||||||| || || |||||||||||| |||||||| |||||||   ||| ||  || |||||  ||| || |||||||||| |||    
T  32544396 gaacgacctcattcgcttgccttctgttaaactcgacatgaaagttctgatatctattaactaataactgtttacaagtagatatgatacaaccaagctc 32544495  T
Q  335 actattatcatcttcatcggaattaacatgatcaacaactctt 377  Q
    || |||||||||| |||  ||||| |||  |||||||| ||||    
T  32544496 accattatcatctacatatgaattcacaaaatcaacaaatctt 32544538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 291
Target Start/End: Complemental strand, 27877855 - 27877701
Alignment:
Q  138 tcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtga 237  Q
    ||||||||||||||||| |||||| |  |||||| ||| |||  ||||||| ||||  | |  |||||||||  | || | || | ||||||||||||||    
T  27877855 tcattgcatttcattagctaaaatatgtcaaatacatgtaggtacatcatcaataacgtggcggctaggattagacagggttgcctgagctaactcgtga 27877756  T
Q  238 gtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |  |||| || | ||||||||||  ||||||| ||||||||||| ||||||||||    
T  27877755 gctaccctatttgcttgcctcctgctgaactcaacatgagagttatgaaatctat 27877701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 140 - 377
Target Start/End: Original strand, 9808675 - 9808913
Alignment:
Q  140 attgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtgagt 239  Q
    ||||||||||||||| |||| |||  |||||| |||||||| ||||||||||||||| || | |||||||  |||| |||||| |||||||||||||||     
T  9808675 attgcatttcattagctaaagtgtgacaaatacatgaaggaacatcatctataatatgggggttaggattggatagagctgtctgagctaactcgtgagc 9808774  T
Q  240 gac-ccatctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcacta 338  Q
    ||| ||||  | ||||||    ||||||||| |||||||||| |||||||||||   ||| |   || ||||| |||| || |||||||||| ||| |||    
T  9808775 gactccattcatttgccttaagttgaactcggcatgagagttttgaaatctattaactaatatatgtttacaagcagatataatacaaccaagctcgcta 9808874  T
Q  339 ttatcatcttcatcggaattaacatgatcaacaactctt 377  Q
    | ||||||| |||  ||||| |||  |||||||||||||    
T  9808875 tcatcatctacatgtgaattcacaaaatcaacaactctt 9808913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 276 - 441
Target Start/End: Original strand, 24329333 - 24329500
Alignment:
Q  276 gagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcactattatcatcttcatcggaattaacatgatcaacaactc 375  Q
    ||||||||||| |||||||||||||| | |||||||  |||||| |||||||||||||||||| || ||| | ||||  |||||| |  |||||||||||    
T  24329333 gagttctgaaaactattttgtaacaaacatctacaagtagaaataatacaaccaaactcactaataccatttacatcacaattaatacaatcaacaactc 24329432  T
Q  376 --ttagaatccatagcaaagtccatgttgttgaattgaaggtctaagatccattgcagagttgtgtgt 441  Q
      ||||||||||  |||||||| |  |||| ||||||||||| | | | ||||||||| | |||||||    
T  24329433 ttttagaatccagtgcaaagtcaacattgtcgaattgaaggtttgacacccattgcagcgctgtgtgt 24329500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 291
Target Start/End: Original strand, 26951397 - 26951551
Alignment:
Q  138 tcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtga 237  Q
    ||||||||||||||||| |||||| | ||||||| ||| |||   |||||| || | || || |||||||||  |||| |||| | ||||||||||||||    
T  26951397 tcattgcatttcattagataaaatatgccaaatacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtga 26951496  T
Q  238 gtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |  |||| || | |||||||||   ||||||| ||||||||||||||||||||||    
T  26951497 gctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctat 26951551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 26440847 - 26440805
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaatctatt 292  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  26440847 cttgcctcctattgaactcgacatgagagttctaaaaactatt 26440805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 346
Target Start/End: Original strand, 11911438 - 11911531
Alignment:
Q  254 cctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaacc-aaactcactattatcatc 346  Q
    ||||||||||||||||||||||||||| ||||| |||||   |||| || |||||||  || | || |||||||| |||||| |||||||||||    
T  11911438 cctcctattgaactcgacatgagagttttgaaaactattaattaactattgtctacatacaaatatgatacaaccaaaactcgctattatcatc 11911531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 18481275 - 18481238
Alignment:
Q  249 acttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||| |||||||||||||||||||||||||||||||||    
T  18481275 acttacctcctattgaactcgacatgagagttctgaaa 18481238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 7251146 - 7251086
Alignment:
Q  251 ttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaa 311  Q
    ||||||||||||||||||||||| |||||||||||| ||| | || |||||| || |||||    
T  7251146 ttgcctcctattgaactcgacataagagttctgaaaactaatctgaaacaattgtttacaa 7251086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 11911341 - 11911381
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatga 176  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  11911341 attcattgcatttcattagctaaaatgtaccaaatacatga 11911381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 11911348 - 11911376
Alignment:
Q  106 gcatttcattagctaaaatgtaccaaata 134  Q
    |||||||||||||||||||||||||||||    
T  11911348 gcatttcattagctaaaatgtaccaaata 11911376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 136 - 338
Target Start/End: Original strand, 33367872 - 33368074
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    ||||||||||||||||||  ||||| ||  ||| || |||| ||||||||||||||||||| || |||| ||||||| ||  |||   | ||||||||||    
T  33367872 attcattgcatttcattatctaaaacgtgtcaa-tacatgagggagcatcatctataatatgggggctaagatttaaaagacctgcatgcgctaactcgt 33367970  T
Q  236 gagtgacc-catctacttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactc 334  Q
     ||  ||| | | ||||| |||| |||| ||||||||||||||||| | ||| |||||||||||||| ||||||||| ||||||| ||||||| |||||     
T  33367971 aagcaacctcttttacttacctcatattaaactcgacatgagagttttaaaaactattttgtaacaaacgtctacaaacagaaataatacaactaaactt 33368070  T
Q  335 acta 338  Q
    ||||    
T  33368071 acta 33368074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 291
Target Start/End: Complemental strand, 30304975 - 30304821
Alignment:
Q  138 tcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtga 237  Q
    |||||||| |||||||| |||||| | ||||||| ||| |||   |||||| || | || || |||||||||  |||| |||| | ||||||||||||||    
T  30304975 tcattgcacttcattagataaaatatgccaaatacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtga 30304876  T
Q  238 gtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |  |||| || | |||||||||   ||||||| ||||||||||||||||| ||||    
T  30304875 gctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaaactat 30304821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 40200353 - 40200403
Alignment:
Q  288 ctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcacta 338  Q
    |||||||||||||| ||||||||| ||||||| ||| ||||||||||||||    
T  40200353 ctattttgtaacaaacgtctacaagcagaaataatagaaccaaactcacta 40200403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 29985461 - 29985376
Alignment:
Q  258 ctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcactattatc 343  Q
    ||||||||||||||||||||||||||| | ||||  || |||||   | |||| ||||| || ||||||||||| |||||||||||    
T  29985461 ctattgaactcgacatgagagttctgatacctatgatggaacaagtttttacagtcagatataatacaaccaaattcactattatc 29985376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 41197426 - 41197462
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||||||| ||||||||||||    
T  41197426 cttgcctcctattgaactcgacataagagttctgaaa 41197462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 285
Target Start/End: Original strand, 36779472 - 36779507
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaa 285  Q
    |||||||||||||| |||||||||||||||||||||    
T  36779472 cttgcctcctattgtactcgacatgagagttctgaa 36779507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 40200246 - 40200313
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagct 203  Q
    |||||| |||||||||||| || |||||  |||||| || | ||||||||||||||||||| ||||||    
T  40200246 attcatcgcatttcattagctataatgtttcaaatacataagggagcatcatctataatatgggagct 40200313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 34562 - 34520
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaatctatt 292  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||    
T  34562 cttgcttcctattaaactcgacatgagagttctgaaaactatt 34520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 24870584 - 24870526
Alignment:
Q  138 tcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatat 196  Q
    ||||||||||||||||| |||||| || |||||||||| |||  ||||||| |||||||    
T  24870584 tcattgcatttcattagctaaaatatatcaaatatatgtaggtacatcatcaataatat 24870526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 30376497 - 30376533
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||||||| |||||| |||||    
T  30376497 cttgcctcctattgaactcgacataagagttttgaaa 30376533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 291
Target Start/End: Original strand, 1017585 - 1017737
Alignment:
Q  140 attgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtgagt 239  Q
    ||||||||||||||| |||||| | ||||||| ||| |||  ||||||| || | || || |||||||||  |||| |||||| |||||||||||||||     
T  1017585 attgcatttcattagataaaatatgccaaatacatgtaggtacatcatcaatcacatgggggctaggattagatagggctgtctgagctaactcgtgagc 1017684  T
Q  240 gaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
     |||| || | |||||||||  |||||||| ||||||||||||||||||||||    
T  1017685 taccctatttgcttgcctccggttgaactcaacatgagagttctgaaatctat 1017737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 291
Target Start/End: Original strand, 10346439 - 10346594
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatat-aggagctaggatttaatagtgctgtcagagctaactcg 234  Q
    ||||||||||||||||||| ||||||||  |||||| |||| ||  ||||||||||||||| ||||  ||| |||  |||| | || | |||||||||||    
T  10346439 attcattgcatttcattagctaaaatgtgtcaaatacatgagggtacatcatctataatatgagga--tagaattatatagggttgcctgagctaactcg 10346536  T
Q  235 tgagtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |||| ||||| ||   |||||||||| |||||||| ||||| ||||||||||||||||    
T  10346537 tgagcgaccctattcgcttgcctcctgttgaactctacatgcgagttctgaaatctat 10346594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 291
Target Start/End: Original strand, 26730828 - 26730982
Alignment:
Q  138 tcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtga 237  Q
    ||||||||||||||||| |||||| | ||||||| ||| |||   |||||| || | || || |||||||||  |||| |||| | |||||||||||||     
T  26730828 tcattgcatttcattagataaaatatgccaaatacatgtaggtatatcatcaatcacatgggggctaggattagatagggctgcctgagctaactcgtgt 26730927  T
Q  238 gtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |  |||| || | |||||||||   ||||||| ||||||||||||||||||||||    
T  26730928 gctaccctatttgcttgcctccggctgaactcaacatgagagttctgaaatctat 26730982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 8705753 - 8705717
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||||||||||||||||||||    
T  8705753 cttgcctcctattgaactcgacatgagagttctgaaa 8705717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 9057640 - 9057604
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||||||||||||||||||||    
T  9057640 cttgcctcctattgaactcgacatgagagttctgaaa 9057604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 36684946 - 36684910
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||||||||||||||||||||    
T  36684946 cttgcctcctattgaactcgacatgagagttctgaaa 36684910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 45736505 - 45736471
Alignment:
Q  252 tgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||||||||||||||||||    
T  45736505 tgcctcctattgaactcgacatgagagttctgaaa 45736471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 347
Target Start/End: Complemental strand, 20916450 - 20916353
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcactattatcatct 347  Q
    ||||||||||||||||||| |||| |||||||||||| ||| | | ||| ||   | ||||| |||| || ||||| |||||||||||||||| ||||    
T  20916450 cttgcctcctattgaactcaacataagagttctgaaaactactatctaataacaatttacaagcagatatgatacatccaaactcactattataatct 20916353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 347
Target Start/End: Complemental strand, 20925412 - 20925315
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaatctattttgtaacaatcgtctacaatcagaaattatacaaccaaactcactattatcatct 347  Q
    ||||||||||||||||||| |||| |||||||||||| ||| | | ||| ||   | ||||| |||| || ||||| |||||||||||||||| ||||    
T  20925412 cttgcctcctattgaactcaacataagagttctgaaaactactatctaataacaatttacaagcagatatgatacatccaaactcactattataatct 20925315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 51976801 - 51976765
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||| ||||||||||||||||    
T  51976801 cttgcctcctattgaactcggcatgagagttctgaaa 51976765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 38998948 - 38998907
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||    
T  38998948 cttgcctcctattaaactcgacatgagagttttgaaaactat 38998907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 49758988 - 49759024
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  49758988 cttgcctcctattgaacccgacataagagttctgaaa 49759024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 291
Target Start/End: Original strand, 21306 - 21461
Alignment:
Q  136 attcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgt 235  Q
    ||||||||||||||||||| ||||||||  |||||| |||  ||  ||||||| ||| ||| || |||||||||  |||| |||    |||||||||  |    
T  21306 attcattgcatttcattagctaaaatgtgtcaaatacatgtgggtacatcatcaatagtatgggggctaggattagatagggctacttgagctaacttat 21405  T
Q  236 gagtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |||  |||| || | |||||||||| ||||||||||||||||| |||||||||||||    
T  21406 gagctaccctatttccttgcctcctgttgaactcgacatgaga-ttctgaaatctat 21461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 4513113 - 4513077
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||||||||||||||||||||    
T  4513113 cttgcctcctattgaactcgacatgagagttctgaaa 4513077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 942734 - 942698
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    |||||||||||||||||||||||| ||||||||||||    
T  942734 cttgcctcctattgaactcgacattagagttctgaaa 942698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 291
Target Start/End: Original strand, 13104327 - 13104481
Alignment:
Q  138 tcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtga 237  Q
    |||||||||||||||||||||| | | ||||||| ||  |||  |||| || ||||||| || |||| ||||  | || |||||| ||||||||||||||    
T  13104327 tcattgcatttcattagttaaa-tatgccaaatacatataggtacatcgtcaataatatgggggctaagattagacagggctgtctgagctaactcgtga 13104425  T
Q  238 gtgacccatctac--ttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |  ||||  ||    ||||||| | |||||||| ||||||||||||||||||||||    
T  13104426 gctaccctacttgctttgcctcttgttgaactcaacatgagagttctgaaatctat 13104481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 27862151 - 27862191
Alignment:
Q  251 ttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  27862151 ttgcctcctgttgaactcaacatgagagttctgaaatctat 27862191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 19047128 - 19047092
Alignment:
Q  250 cttgcctcctattgaactcgacatgagagttctgaaa 286  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  19047128 cttgcctcctattaaactcgacatgagagttttgaaa 19047092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 291
Target Start/End: Original strand, 255323 - 255477
Alignment:
Q  138 tcattgcatttcattagttaaaatgtaccaaatatatgaaggagcatcatctataatataggagctaggatttaatagtgctgtcagagctaactcgtga 237  Q
    ||||||||||||||||| |||| | | ||||||| ||| |||   |||||| || |||| || |||||||||  |||| |||| | |||||||| |||||    
T  255323 tcattgcatttcattagataaagtatgccaaatacatgtaggtatatcatcaatcatatgggggctaggattagatagggctgcctgagctaacccgtga 255422  T
Q  238 gtgaccc-atctacttgcctcctattgaactcgacatgagagttctgaaatctat 291  Q
    |  |||| || | |||||||||   ||||||| |||||||| |||||||||||||    
T  255423 gctaccctatttgcttgcctccggctgaactcaacatgagaattctgaaatctat 255477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 48142 - 48110
Alignment:
Q  251 ttgcctcctattgaactcgacatgagagttctg 283  Q
    |||||||||||| ||||||||||||||||||||    
T  48142 ttgcctcctattcaactcgacatgagagttctg 48110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University