View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_10 (Length: 427)
Name: NF2261_low_10
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 15734026 - 15734432
Alignment:
| Q |
17 |
cttatgctgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggtttttcgtgattcggattgaagcaattggt |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15734026 |
cttatgttgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggtttttcgtgattcggattgaagcaatcggt |
15734125 |
T |
|
| Q |
117 |
agaagaatttgaaagaaagattgtagaaactcatttgtggatgaagactattgtttttatcggttagctcaaaaagttttgttaaaacaaacatcggaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
15734126 |
agaagaatttgaaagaaagattgtagaaactcatttgtggatgaagactattgtttttatcggttagctcgaaaagttttgttaaaacaaacattggaag |
15734225 |
T |
|
| Q |
217 |
ttggttttcaagcattatcatctcgcgacgaatggttggtaacatccatctactaagagaaggaacatgtttgaattcgttatccgataaatccctcaag |
316 |
Q |
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| T |
15734226 |
ttggttttcaagcattatcatctcgcgacgaatggttggtaacatccatctactaagagaaggaacatgtttgaattcgttatccgataaatccctcaag |
15734325 |
T |
|
| Q |
317 |
agttgaatgatgaaagaaccatcaaccaacatcatctttagaaactcatcactgcttaatttgatttcacccatgtaacagcttcgcgcattgatttctt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15734326 |
agttgaatgatgaaagaaccatcaaccaacatcatctttagaaactcatcactgcttaatttgatttcacccatgtaacagtttcgcgcattgatttctt |
15734425 |
T |
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| Q |
417 |
ctctctc |
423 |
Q |
| |
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| T |
15734426 |
ctttctc |
15734432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 18057413 - 18057822
Alignment:
| Q |
17 |
cttatgctgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggtttttcgtgattcggattgaagcaattggt |
116 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| || |||| || |||||| || |
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| T |
18057413 |
cttatgttgtatctaagaagatcaagaacatgttcaactttatacttgtaagatgtttgacatttaggggtttttctcgactcgggtttaagcaaaccgt |
18057512 |
T |
|
| Q |
117 |
agaagaatttgaaagaaagattgtagaaactcatttgtggatgaagactattgttt---ttatcggttagctcaaaaagttttgttaaaacaaacatcgg |
213 |
Q |
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||||||||||||| |||||| ||| ||||||||||||||| | | |||||||| | |||| ||||| ||||| | |||||||||||||||||| || |
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| T |
18057513 |
agaagaatttgaaggaaagagtgttgaaactcatttgtggtttaggactattggtcatgttattggttaattcaaacaattttgttaaaacaaacattgg |
18057612 |
T |
|
| Q |
214 |
aagttggttttcaagcattatcatctcgcgacgaatggttggtaacatccatctactaagagaaggaacatgtttgaattcgttatccgataaatccctc |
313 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||| |
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| T |
18057613 |
aagttggttttcgagcattatcaactcgcgacgaatggttggtaacatccatctactaagagaaggaacatgtttgaatttgttgtctgataaatctctc |
18057712 |
T |
|
| Q |
314 |
aagagttgaatgatgaaagaaccatcaaccaacatcatctttagaaactcatcactgcttaatttgatttcacccatgtaacagcttcgcgcattgattt |
413 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | |
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| T |
18057713 |
aagagttgaatgatgaaagaaccatcaactaacatcatctttagaaactcatcactgcttaatttgatttcacccatgtaacatcttctagcattgatct |
18057812 |
T |
|
| Q |
414 |
cttctctctc |
423 |
Q |
| |
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||||| |||| |
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| T |
18057813 |
cttctttctc |
18057822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 15728007 - 15728146
Alignment:
| Q |
17 |
cttatgctgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggtttttcgtgattcggattgaagcaattggt |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15728007 |
cttatgttgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggtttttcatgattcggattgaagcaattggt |
15728106 |
T |
|
| Q |
117 |
agaagaatttgaaagaaagattgtagaaactcatttgtgg |
156 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |
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| T |
15728107 |
agaagaatatgaaagaaagattgtagaaactcatttgtgg |
15728146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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