View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2261_low_11 (Length: 418)

Name: NF2261_low_11
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2261_low_11
NF2261_low_11
[»] chr7 (16 HSPs)
chr7 (1-410)||(24697039-24697448)
chr7 (14-317)||(24537331-24537622)
chr7 (170-298)||(24826937-24827065)
chr7 (170-295)||(24727106-24727231)
chr7 (170-295)||(24854911-24855036)
chr7 (174-295)||(24896155-24896276)
chr7 (14-124)||(24826736-24826846)
chr7 (170-263)||(24899843-24899936)
chr7 (170-277)||(24807201-24807308)
chr7 (189-283)||(24863523-24863617)
chr7 (170-271)||(24754919-24755020)
chr7 (170-253)||(24842987-24843070)
chr7 (58-124)||(24726943-24727009)
chr7 (46-124)||(24807041-24807119)
chr7 (170-249)||(24834667-24834746)
chr7 (14-48)||(24726876-24726910)


Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 24697039 - 24697448
Alignment:
Q  1 tccacaagctcacggttgctcatcttgagatgatccacaactattttcttgttcttaagaagttgaacatcgtcttcagaacagatcaagccattgaaaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697039 tccacaagctctcggttgctcatcttgagatgatccacaactattttcttgttcttaagaagttgaacatcgtcttcagaacagatcaagccattgaaaa 24697138  T
Q  101 tcaaagcagccgaagtgaatttgcagttaccagagccccttcttgttgtacttcgaagattactttgaagatgttcccaagcaattagattgcaccactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697139 tcaaagcagccgaagtgaatttgcagttaccagagccccttcttgttgtacttcgaagattactttgaagatgttcccaagcaattagattgcaccactt 24697238  T
Q  201 ggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaagttcaaacatttcaattccacctcttggtga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697239 ggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaagttcaaacatttcaattccacctcttggtga 24697338  T
Q  301 atataatccaaatccaagtgcctgcccctctcattcacaagaaagatactgttaagcaaaccacataaactcctccacaccaagcttaaattaaagttac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24697339 atataatccaaatccaagtgcctgcccctctcattcacaagaaagatactgttaagcaaaccacataaactcctccacaccaagcttaaattaaagttac 24697438  T
Q  401 tatattcttc 410  Q
    ||||||||||    
T  24697439 tatattcttc 24697448  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 24537622 - 24537331
Alignment:
Q  14 ggttgctcatcttgagatgatccacaactattttcttgttcttaagaagttgaacatcgtcttcagaacagatcaagccattgaaaatcaaagcagccga 113  Q
    ||||||||||||| | || ||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||  || |||||||||||||||||| |    
T  24537622 ggttgctcatcttcacataatccacaacaattttcttgtccttaagaagttgaacatcatcttccgaacagatcagaccgttgaaaatcaaagcagccaa 24537523  T
Q  114 agtgaatttgcagttaccagagccccttcttgttgtacttcgaagattactttgaagatgttcccaagcaattagattgcaccacttggcttttgttgtt 213  Q
    |||||||||||||   |||||||| | ||||| |            ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24537522 agtgaatttgcagccgccagagccgcctcttgct------------ttagtttgaagatgttcccaagcaattagattgcaccacttagcttttgttgtt 24537435  T
Q  214 ttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaagttcaaacatttcaattccacctcttggtgaatataatccaaat 313  Q
    || ||||||||||| |||||||||||||||| ||||||||||||||| || | ||||| || || || ||||| ||||||||    ||||| ||||||||    
T  24537434 tttgtgatatgcaactgttcaatttcaagttcccccttttcaaacttgaatttaaagtccataccttccaatttcacctcttcagaaatatgatccaaat 24537335  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 170 - 298
Target Start/End: Original strand, 24826937 - 24827065
Alignment:
Q  170 gatgttcccaagcaattagattgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaa 269  Q
    |||| ||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||||| |||||||||  || |||||||||||||||||| |||    
T  24826937 gatgctcccaagcaataagattacaccacttggcttttgtcgtttttgtgatatgcagttgtttaatttcaagagtctccttttcaaacttaaagtaaaa 24827036  T
Q  270 gttcaaacatttcaattccacctcttggt 298  Q
    || ||||| ||||||||||| ||||||||    
T  24827037 gtccaaacctttcaattccatctcttggt 24827065  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 170 - 295
Target Start/End: Original strand, 24727106 - 24727231
Alignment:
Q  170 gatgttcccaagcaattagattgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaa 269  Q
    ||||||||||||||||||||||  ||||||||| ||||||||| || |||||||| |  ||||||||||||||||| ||||||| ||||||||||| |||    
T  24727106 gatgttcccaagcaattagattataccacttggattttgttgtgtttgtgatatgtagctgttcaatttcaagtttgccctttttaaacttaaagtaaaa 24727205  T
Q  270 gttcaaacatttcaattccacctctt 295  Q
    || ||||| ||||| |||||||||||    
T  24727206 gtccaaacctttcatttccacctctt 24727231  T

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Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 295
Target Start/End: Original strand, 24854911 - 24855036
Alignment:
Q  170 gatgttcccaagcaattagattgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaa 269  Q
    |||||||||||||||||| ||||||||||||  ||||| ||||||| |||||||||| ||||||||||||||||| ||| |||| ||||||||||| |||    
T  24854911 gatgttcccaagcaattatattgcaccacttatctttttttgtttttgtgatatgcagttgttcaatttcaagttccccattttgaaacttaaagtaaaa 24855010  T
Q  270 gttcaaacatttcaattccacctctt 295  Q
     | ||| | ||||| ||| |||||||    
T  24855011 atccaatcctttcacttctacctctt 24855036  T

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Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 295
Target Start/End: Original strand, 24896155 - 24896276
Alignment:
Q  174 ttcccaagcaattagattgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaagttc 273  Q
    |||||||||||||| |||||||||||| ||||||||||||||  ||||||||| ||||||||||||||||| ||| |||| ||||||||||| ||| | |    
T  24896155 ttcccaagcaattatattgcaccacttagcttttgttgtttttatgatatgcagttgttcaatttcaagttccccattttgaaacttaaagtaaaaatcc 24896254  T
Q  274 aaacatttcaattccacctctt 295  Q
    || | ||||| ||| |||||||    
T  24896255 aatcctttcacttctacctctt 24896276  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 24826736 - 24826846
Alignment:
Q  14 ggttgctcatcttgagatgatccacaactattttcttgttcttaagaagttgaacatcgtcttcagaacagatcaagccattgaaaatcaaagcagccga 113  Q
    |||||||||||||||||| ||||||||  ||||||||||  || |||||||| ||||| ||| ||||||||||||   | |||||||||||||||||| |    
T  24826736 ggttgctcatcttgagattatccacaatgattttcttgtctttgagaagttggacatcatctgcagaacagatcagatcgttgaaaatcaaagcagccca 24826835  T
Q  114 agtgaatttgc 124  Q
    ||| |||||||    
T  24826836 agtaaatttgc 24826846  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 24899936 - 24899843
Alignment:
Q  170 gatgttcccaagcaattagattgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaa 263  Q
    |||| ||||||||||||| |||||||||||| ||||| || ||||| || |||||||||||| ||||||||| |||||| || |||||||||||    
T  24899936 gatgctcccaagcaattacattgcaccactttgctttcgtagtttttgtaatatgcaattgtgcaatttcaaatttcccattctcaaacttaaa 24899843  T

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Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 24807201 - 24807308
Alignment:
Q  170 gatgttcccaagcaattagattgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaa 269  Q
    |||| ||||||||||| | ||||| |||||| || || |||||||| |||||||||| | || |||||| ||||||||| |||||||||||||| | |||    
T  24807201 gatgctcccaagcaatcatattgcgccactttgccttcgttgtttttgtgatatgcagtggtgcaatttgaagtttcccgttttcaaacttaaactcaaa 24807300  T
Q  270 gttcaaac 277  Q
    ||||||||    
T  24807301 gttcaaac 24807308  T

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Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 24863523 - 24863617
Alignment:
Q  189 attgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaagttcaaacatttca 283  Q
    ||||| |||||| |||||||||||||  ||||||||||| ||||||||||  |||||||| || ||||||||||| ||||||| ||||| |||||    
T  24863523 attgcgccactttgcttttgttgtttctgtgatatgcaactgttcaattttcagtttcccattgtcaaacttaaaatgaaagtccaaacctttca 24863617  T

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Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 24754919 - 24755020
Alignment:
Q  170 gatgttcccaagcaattagattgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttccccttttcaaacttaaagtgaaa 269  Q
    |||| ||||||||||| | |||||||||||| |||||||||||||| || || |  || ||| ||||||| ||| ||||||||||||| ||||||| |||    
T  24754919 gatgctcccaagcaatgacattgcaccacttagcttttgttgtttttgttatctctaactgtgcaatttccagtgtccccttttcaaagttaaagtaaaa 24755018  T
Q  270 gt 271  Q
    ||    
T  24755019 gt 24755020  T

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Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 24843070 - 24842987
Alignment:
Q  170 gatgttcccaagcaattagattgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttcccctttt 253  Q
    |||| ||| ||||||| | ||||  |||||| ||||| ||||||||||||||||| || ||| ||||||| |||||||||||||    
T  24843070 gatgctccaaagcaatgaaattgagccactttgctttcgttgttttagtgatatgtaactgtgcaatttccagtttcccctttt 24842987  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 24726943 - 24727009
Alignment:
Q  58 agaagttgaacatcgtcttcagaacagatcaagccattgaaaatcaaagcagccgaagtgaatttgc 124  Q
    |||||||| ||||| ||| ||||||| ||||  |||||||||||| |||||||| ||||||||||||    
T  24726943 agaagttggacatcatctgcagaacatatcagaccattgaaaatcgaagcagcccaagtgaatttgc 24727009  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 24807041 - 24807119
Alignment:
Q  46 ttcttgttcttaagaagttgaacatcgtcttcagaacagatcaagccattgaaaatcaaagcagccgaagtgaatttgc 124  Q
    ||||||||||| |||||||  ||||| ||| || | ||||| ||| ||||||||||||| |||||||||| ||||||||    
T  24807041 ttcttgttcttgagaagtttcacatcatctgcacagcagattaagtcattgaaaatcaacgcagccgaagcgaatttgc 24807119  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 24834667 - 24834746
Alignment:
Q  170 gatgttcccaagcaattagattgcaccacttggcttttgttgttttagtgatatgcaattgttcaatttcaagtttcccc 249  Q
    |||| |||||| |||| | ||||| |||||| ||||| |||||||  ||||||||||| ||| ||||||| |||||||||    
T  24834667 gatgctcccaaacaatgacattgcgccactttgctttcgttgtttctgtgatatgcaactgtgcaatttcgagtttcccc 24834746  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 24726876 - 24726910
Alignment:
Q  14 ggttgctcatcttgagatgatccacaactattttc 48  Q
    |||||||||||||||||||||||||||| ||||||    
T  24726876 ggttgctcatcttgagatgatccacaacaattttc 24726910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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