View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2261_low_12 (Length: 401)
Name: NF2261_low_12
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_12 |
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| [»] chr5 (4 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 401
Target Start/End: Complemental strand, 2841309 - 2840921
Alignment:
| Q |
14 |
agaagcacgaacgaatttggaaaca-gagaaatttaatttaatttgaatcatcgtaatatgacatgtgtttctagcttctaatatctttaaatttgaatc |
112 |
Q |
| |
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||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2841309 |
agaagcacgaatgaatttgaaaacaagagaaatttaatttaatttgaatcatcgtaatatgacatgtgtttctagcttctaatatctttaaatttgaatc |
2841210 |
T |
|
| Q |
113 |
atatagtagtattcagatcctttccattacatatgcatttgctatcatgaagaaaattaaaccattagaggtgaaggcatacaaagtgaacaaatcaaaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
2841209 |
atatagtagtattcagatcctttccattacatatgcacttgctatcatgaagaaaattaaaccattagaggtgaaggcatacaaactgaacaaatcacaa |
2841110 |
T |
|
| Q |
213 |
acaaaccacaatttaatcatactttaatacacacaatttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaac |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2841109 |
acaaaccacaatttaatcatactttaatacacacaatttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaaacttgaac |
2841010 |
T |
|
| Q |
313 |
ttactaaagcacatatacaaacctaaagactgaagactgattttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgc |
401 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2841009 |
ttactaaagcacatatacaaacctaaagactgaagactgattttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgc |
2840921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 2848691 - 2848353
Alignment:
| Q |
14 |
agaagcacgaacgaatttggaaacagagaaatttaatttaatttgaatcatcgtaatatgacatgtgtttctagcttctaatatctttaaatttgaatca |
113 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
2848691 |
agaagcacgaatgaatttggaaatagagaaatttaatttaatttgaatcatcataatatgacatgtgtttctggcttctaatatctttaaatttgaatca |
2848592 |
T |
|
| Q |
114 |
tatagtagtattcagatcctttccattacatatgcatttgctatcatgaagaaaattaaaccattagaggtgaaggcatacaaagtgaacaaatcaaaaa |
213 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| |
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| T |
2848591 |
tatagttgtattcatatcctttccattacatatgcacttgctatcatgaagaaaattaaactattagaggtgaaggcatacaaactgaacaaatcacaaa |
2848492 |
T |
|
| Q |
214 |
caaaccacaatttaatcatactttaatacacacaatttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaact |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2848491 |
caaaccacaatttaatcatactttaatacacacaatttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaact |
2848392 |
T |
|
| Q |
314 |
tactaaagcacatatacaaacctaaagactgaagactga |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2848391 |
tactaaagcacatatacaaacctaaagactgaagactga |
2848353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 2848209 - 2848171
Alignment:
| Q |
341 |
actgaagactgattttaacaccagtaaaagtcatgttta |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2848209 |
actgaagactgattttaacaccagtaaaagtcatgttta |
2848171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 6701628 - 6701595
Alignment:
| Q |
92 |
taatatctttaaatttgaatcatatagtagtatt |
125 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
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|
| T |
6701628 |
taatatctttaaatttgaatcatataggagtatt |
6701595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 397
Target Start/End: Complemental strand, 6982013 - 6981630
Alignment:
| Q |
14 |
agaagcacgaacgaatttggaaacagagaaatttaatttaatttgaatcatcgtaatatgacatgtgtttctagcttctaatatctttaaatttgaatca |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6982013 |
agaagcacgaatgaatttggaaacagagaaatttaatttaatttgaatcatcgtaatatgacatgtgtttctagcttctaatatctttaaatttgaatca |
6981914 |
T |
|
| Q |
114 |
tatagtagtattcagatcctttccattacatatgcatttgctatcatgaagaaaattaaaccattagaggtgaaggcatacaaagtgaacaaatcaaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| |
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| T |
6981913 |
tatagtagtattcagatcctttccattacatatgcacttgctatcatgaagaaaattaaaccattagaggtgaaggcatacaaactgaataaatcacaaa |
6981814 |
T |
|
| Q |
214 |
caaaccacaatttaatcatactttaatacacacaatttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaact |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
6981813 |
caaaccacaatttaatcatactttaatacacacaatttaatgcccttctcatatttaattatttcttctcatgaaaacagtcaaattttaattttgaact |
6981714 |
T |
|
| Q |
314 |
tactaaagcacatatacaaacctaaagactgaagactgattttaacaccagtaaaagtcatgtttagccggcctacaaacacca |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6981713 |
tactaaagcacatatacaaacctaaagactgaagactgattttaacaccagtaaaagtcatgtttagctggcctacaaacacca |
6981630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 401
Target Start/End: Complemental strand, 54420402 - 54420015
Alignment:
| Q |
14 |
agaagcacgaacgaatttggaaacagagaaatttaatttaatttgaatcatcgtaatatgacatgtgtttctagcttctaatatctttaaatttgaatca |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
54420402 |
agaagcacgaatgaatttggaaacagagaaatttaatttaatttaaatcatcgtaatatgacatgtgtttctagcttcaaatatctttaaatttgaatta |
54420303 |
T |
|
| Q |
114 |
tatagtagtattcagatcctttccattacatatgcatttgctatcatgaagaaaattaaaccattagaggtgaaggcatacaaagtgaacaaatcaaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||| |
|
|
| T |
54420302 |
tatagtagtattcagatcctttccattacatatgcacttgctatcatgaagaaaagtaaaccattagaggtgaaggcatacaaactgaataaatcacaaa |
54420203 |
T |
|
| Q |
214 |
caaaccacaatttaatcatactttaatacacacaatttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54420202 |
caaaccacaatttaatcatactttaatacacacagtttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaact |
54420103 |
T |
|
| Q |
314 |
tactaaagcacatatacaaacctaaagactgaagactgattttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54420102 |
tactaaagcacatatacaaacctaaagactgaagactgattttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgc |
54420015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 1143446 - 1143368
Alignment:
| Q |
228 |
atcatactttaatacacacaatttaatgcccttctcatattt----aattatttcctctcatgaaaacagtcaaatttt |
302 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| ||||||| | ||||| ||||||||||||||| ||||||||| |
|
|
| T |
1143446 |
atcatactttaatatacacaatttaatacccttcccatatttattgatttattccctctcatgaaaacaatcaaatttt |
1143368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 68 - 401
Target Start/End: Original strand, 29534438 - 29534770
Alignment:
| Q |
68 |
aatatgacatgtgtttctagcttctaatatctttaaatttgaatcatatagtagtattcagatcctttccattacatatgcatttgctatcatgaagaaa |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29534438 |
aatatgacatgtgtttctagcttctaatatctttaaatttgaatcatatagtagtattcagatcctttccattacatatgcacttgctatcatgaagaaa |
29534537 |
T |
|
| Q |
168 |
attaaaccattagaggtgaaggcatacaaagtgaacaaatcaaaaacaaaccacaatttaatcatactttaatacacacaatttaatgcccttctcatat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
29534538 |
attaaaccattagaggtgaaggcatacaaactgaataaatcacagacaaaccacaatttaatcatactttagtacacacaatataatgcccttctcatat |
29534637 |
T |
|
| Q |
268 |
ttaattatttcctctcatgaaaacagtcaaattttaagcttgaacttactaaagcacatatacaaacctaaagactgaagactgattttaacaccagtaa |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29534638 |
ttaattatttcctctcatgaaaacagtcaaattttaagcttgaacttactaaagcacatatacaaacctaaagactgaagactga-tttaacaccagtaa |
29534736 |
T |
|
| Q |
368 |
aagtcatgtttagccggcctacaaacaccaccgc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
29534737 |
aagtcatgtttagccggcctacaaacaccaccgc |
29534770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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