View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_14 (Length: 393)
Name: NF2261_low_14
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 30843297 - 30843638
Alignment:
| Q |
11 |
gatgaaagcatgtgggtctgacgttccataacgtagcttcgatcttatcgtctatgtgcatatgatacaacaaaaaatgtatcttttcatacacatgtga |
110 |
Q |
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| T |
30843297 |
gatgaaagcatgtgggtctgacgttccttaacgtagcttcgatcttatcatctatgtgcatatgatacaacaaaaaatgtatcttttcatacacacgtga |
30843396 |
T |
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| Q |
111 |
atgacatcacttatatgtgcatgatatactatactcatggttgcatttaacctcaaacaccaattagtaaatcactaannnnnnnaggaagaattactaa |
210 |
Q |
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| T |
30843397 |
atgacatcacttatatgtgcatgaaatactatactcatggttgcatttaacctcaaacaccaattagtaaatcact-atttttttaggaagaattactaa |
30843495 |
T |
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| Q |
211 |
atcatcattgttgctactaaaacagaacaatgtcacaacacaatttgtagggctgtaaaagaaatgtaactttttgacaaagtgaaaattaatcttttac |
310 |
Q |
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| T |
30843496 |
atcatcattgttgctactaaaacagaacaatgtcacaacacaatttgtagggctgtaaaaaaaatgtaacttttttacaaagtgaaaattaatcttttac |
30843595 |
T |
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| Q |
311 |
tctaataaaataaagagatgacatacaaag-aaaaaatggtctttttt |
357 |
Q |
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| T |
30843596 |
tctaataaaataaagag-----atacaaagaaaaaaatggtctttttt |
30843638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 30880118 - 30880274
Alignment:
| Q |
11 |
gatgaaagcatgtgggtctgacgttccataacgtagcttcgatcttatcgtctatgtgcatatgatacaacaaaaaatgtatcttttcatacacatgtga |
110 |
Q |
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| T |
30880118 |
gatgaaagcatgtgggtctgacgctccataaagtagattcgatcttatcacctacgcgcataagatgccacaaaaaatgtatcttttcatacacatgtga |
30880217 |
T |
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| Q |
111 |
atgacatcacttatatgtgcatgatatactatactcatggttgcatttaacctcaaa |
167 |
Q |
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| T |
30880218 |
atgacgtcacttacatgtgaaggagttattataataatggttgcatttaacctcaaa |
30880274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 326
Target Start/End: Original strand, 30880296 - 30880400
Alignment:
| Q |
221 |
ttgctactaaaacagaacaatgtcacaacacaatttgtagggctgtaaaagaaatgtaactttttgacaaagtgaaaattaatcttttactctaataaaa |
320 |
Q |
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| T |
30880296 |
ttgctactaaaacagaacaatattacaacacaatttgtagggctgt-aaggaaatgtaaatattttacaaagtgaaaattaatctctgaatctaataaaa |
30880394 |
T |
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| Q |
321 |
taaaga |
326 |
Q |
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|||||| |
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| T |
30880395 |
taaaga |
30880400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 30886165 - 30886241
Alignment:
| Q |
220 |
gttgctactaaaacagaacaatgtcacaacacaatttgtagggctgtaaaagaaatgtaactttttgacaaagtgaa |
296 |
Q |
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|||||||| ||||||||| | |||||||||| || ||||||||||||||| || ||||||||||| |||||||||| |
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| T |
30886165 |
gttgctacagaaacagaactaggtcacaacacgatatgtagggctgtaaaaaaattgtaacttttttacaaagtgaa |
30886241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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