View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_15 (Length: 375)
Name: NF2261_low_15
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 34859533 - 34859160
Alignment:
| Q |
1 |
atacacctttcttctgtctgtggatcatgctcaccatggaagcaaaccaagttttttcaacatcaaaaactgatatagaaatttgttctttcagtatgtg |
100 |
Q |
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| T |
34859533 |
atacacctttcttctgtctgtggatcatgctcaccatagaaacaaaccaagttttttcaacatcaaaaactgatatagaaatttgttctttcagtatgtg |
34859434 |
T |
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| Q |
101 |
tgttaaagacagagaaacacctttaattagggtggaaataggctaggaccatctaggctttgcataaacaggtctaaccattttataaaaaacaaagctg |
200 |
Q |
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| T |
34859433 |
tgttaaagacagagaaacacctttaattagggtggaaataggctaggaccatctaggctttgcataaataggtctaaccattttatagaaaacaaagctg |
34859334 |
T |
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| Q |
201 |
aacctggtatgttacggttatttctaagacctgagnnnnnnnnnnaaagtctggtatgacttgctagcttacttaaaaaggtttatttcatattaacaat |
300 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34859333 |
aacctggtatgttacagttatttctaagacctgag-tttttttttaaagtctggtatgacttgctagcttacttaaaaaggtttatttcatattaacaat |
34859235 |
T |
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| Q |
301 |
tttaaacaagtaatcttaaaatagactaaccagctaatatgtcaacgagatgaagttctattttgaactaatatt |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34859234 |
tttaaacaagtaatcttaaaatagactaaccagctaatatgtcaacgagatgaagttctattttgaactaatatt |
34859160 |
T |
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