View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2261_low_17 (Length: 346)

Name: NF2261_low_17
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2261_low_17
NF2261_low_17
[»] chr6 (11 HSPs)
chr6 (1-334)||(6497595-6497928)
chr6 (1-334)||(6460744-6461077)
chr6 (7-251)||(6519576-6519820)
chr6 (96-251)||(6529216-6529371)
chr6 (100-256)||(6506507-6506663)
chr6 (103-256)||(6472041-6472194)
chr6 (93-256)||(6466347-6466510)
chr6 (93-257)||(6515089-6515253)
chr6 (124-212)||(7204154-7204242)
chr6 (124-212)||(7238905-7238993)
chr6 (127-209)||(6458424-6458506)
[»] chr7 (3 HSPs)
chr7 (91-245)||(9664312-9664466)
chr7 (127-256)||(3752829-3752958)
chr7 (100-209)||(4047253-4047362)
[»] chr4 (1 HSPs)
chr4 (91-245)||(13535336-13535490)


Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 6497595 - 6497928
Alignment:
Q  1 actacatgtttttcattggatgttttcgtagcggaagtgatggtaagatcagcagtgaaaacttgagatatagcagaagggctgatggaaatagatggat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497595 actacatgtttttcattggaagttttcgtagcggaagtgatggtaagatcagcagtgaaaacttgagatatagcagaagggctgatggaaatagatggat 6497694  T
Q  101 atgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497695 atgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtt 6497794  T
Q  201 tgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctgggataatagttgaacttggatctgtcattggaaaaggagagctcatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6497795 tgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctgggataatagttgaacttgaatctgtcattggaaaaggagagctcatt 6497894  T
Q  301 ttgttgttgatagtaaatatctatttttggtgat 334  Q
    |||||||||||||||||| |||||||||||||||    
T  6497895 ttgttgttgatagtaaatctctatttttggtgat 6497928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 6461077 - 6460744
Alignment:
Q  1 actacatgtttttcattggatgttttcgtagcggaagtgatggtaagatcagcagtgaaaacttgagatatagcagaagggctgatggaaatagatggat 100  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  6461077 actacatgtttttcattggaagtttttgtagaggaagtgatggtaagatcagcagtgaaaacttgggatatagcagaagggctgatggaaagagatggat 6460978  T
Q  101 atgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtt 200  Q
    |||| |||||||| |||||||  || ||| ||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||||||||| |||||    
T  6460977 atgagacagaaagagatgagttggaagatctgatgaggtaaggatgaaagtattccggttggtcaccattgtcgagaacaaagttttggaagaaggagtt 6460878  T
Q  201 tgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctgggataatagttgaacttggatctgtcattggaaaaggagagctcatt 300  Q
    ||| ||||| ||||| ||||||||||||  ||||||||||||||||||||| ||||  | ||| |||||||||||| |||||||||||||||||||||||    
T  6460877 tgtagggagtggtttggatagcagatttgaagagaagaatttggaggggtcagggaggacagtggaacttggatctatcattggaaaaggagagctcatt 6460778  T
Q  301 ttgttgttgatagtaaatatctatttttggtgat 334  Q
    |||||||||||||||||| |||||||||||||||    
T  6460777 ttgttgttgatagtaaatctctatttttggtgat 6460744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 6519820 - 6519576
Alignment:
Q  7 tgtttttcattggatgttttcgtagcggaagtgatggtaagatcagcagtgaaaacttgagatatagcagaagggctgatggaaatagatggatatgaaa 106  Q
    |||||||| ||||| ||||| ||||  ||||| ||||||||||||||| |||||||||| |||||| |||||| | | | | ||   ||||| || ||||    
T  6519820 tgtttttcgttggaagtttttgtagaagaagttatggtaagatcagcattgaaaacttgggatataacagaagagtttaagaaacgtgatgggtaagaaa 6519721  T
Q  107 cagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggg 206  Q
    ||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  6519720 cagaaagtgatgagtttgatgatttaatgaggtatggatgaatatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttgtagg 6519621  T
Q  207 gaggggtttagatagcagatttttagagaagaatttggaggggtc 251  Q
    ||||||||| ||||| | ||||  |||||||||||||||||||||    
T  6519620 gaggggtttggatagtaaatttggagagaagaatttggaggggtc 6519576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 6529216 - 6529371
Alignment:
Q  96 tggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaa 195  Q
    |||||| |||| |||||||||||||||||| ||||||||||| || |||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  6529216 tggataggaaatagaaagtgatgagtctgaagatttgatgagatatggatgaatgtattcaggttggtcaccattgttgagaacaaagttttggaagaaa 6529315  T
Q  196 gagtttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtc 251  Q
    |||||||| ||||||||| | ||||||||||||  |||||||||||||||||||||    
T  6529316 gagtttgtagggaggggtgtggatagcagatttggagagaagaatttggaggggtc 6529371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 6506507 - 6506663
Alignment:
Q  100 tatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagt 199  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||   ||||| |||||||||||||||||||||||||||||||    
T  6506507 tatgagacagaaagtgatgagtttgatgatttgatgaggtaaggatgaaagtattcaggtgcatcaccattgttgagaacaaagttttggaagaaagagt 6506606  T
Q  200 ttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctggga 256  Q
    |||| || |||||| | ||||||||||||  ||||||||||||||||||||| ||||    
T  6506607 ttgtaggcaggggtgtggatagcagatttggagagaagaatttggaggggtcaggga 6506663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 6472194 - 6472041
Alignment:
Q  103 gaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttg 202  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||| || || || |||| ||||||||||||||||||||    
T  6472194 gaaacagaaagtgatgagtttgatgatttgatgaggtaaggatgaatgtattcaggttggtcaccattttttaggacaatgttttggaagaaagagtttg 6472095  T
Q  203 tggggaggggtttagatagcagatttttagagaagaatttggaggggtctggga 256  Q
    | ||||||||| | ||||||| ||||   |||||||||||||||||||| ||||    
T  6472094 tagggaggggtgtggatagcaaatttggtgagaagaatttggaggggtcaggga 6472041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 93 - 256
Target Start/End: Original strand, 6466347 - 6466510
Alignment:
Q  93 agatggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaag 192  Q
    |||||| || |||| |||||||||||||| ||| ||||||||||| || |||||||  ||||||||||||||||| || |||||||||||||||||||||    
T  6466347 agatgggtaagaaagagaaagtgatgagtttgaagatttgatgagatatggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaag 6466446  T
Q  193 aaagagtttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctggga 256  Q
    ||||||||||||||||||||| | ||||||||||||  ||||||||| || | |||||| ||||    
T  6466447 aaagagtttgtggggaggggtgtggatagcagatttggagagaagaagtttgtggggtcaggga 6466510  T

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Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 6515253 - 6515089
Alignment:
Q  93 agatggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaag 192  Q
    |||||| ||||||| |||||||||||||| || |||| |||||||||||||||| |  |||||||||   ||||| |   |||||  |||||||||||||    
T  6515253 agatgggtatgaaaaagaaagtgatgagtttgttgatctgatgaggtaaggatggatgtattcaggtgtttcaccctctctgagagaaaagttttggaag 6515154  T
Q  193 aaagagtttgtggggaggggtttagatagcagatttttagagaagaatttggaggggtctgggat 257  Q
    ||||||||||||||||||||| ||||||| ||||||   |||||||| |||||||| || |||||    
T  6515153 aaagagtttgtggggaggggtgtagatagaagatttggggagaagaacttggagggatcagggat 6515089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 7204242 - 7204154
Alignment:
Q  124 gatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggagggg 212  Q
    |||||||| |||||||| |||||||  ||||||||||||||||| ||| |||||||||||||||||||||||||  | |||||||||||    
T  7204242 gatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggg 7204154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 7238993 - 7238905
Alignment:
Q  124 gatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggagggg 212  Q
    |||||||| |||||||| |||||||  ||||||||||||||||| ||| |||||||||||||||||||||||||  | |||||||||||    
T  7238993 gatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaagaaatagtggggagggg 7238905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 6458424 - 6458506
Alignment:
Q  127 gatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggag 209  Q
    ||||||||||||||||| ||||  || ||||||  |||||| || |  |||||||| |||||||||||||||||||| |||||    
T  6458424 gatttgatgaggtaagggtgaatgtactcaggtgtgtcaccattttgtagaacaaaattttggaagaaagagtttgttgggag 6458506  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 9664466 - 9664312
Alignment:
Q  91 atagatggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttgga 190  Q
    ||||||||||| |||| ||||||||||||||  || ||||||| ||| ||||| ||||  ||||||  ||||||||| || |||||||||||||||||||    
T  9664466 atagatggatacgaaagagaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttgga 9664367  T
Q  191 agaaagagtttgtggggaggggtttagatagcagatttttagagaagaatttgga 245  Q
    ||||||||||||| ||||||||| ||||||| ||||||  ||||||||| |||||    
T  9664366 agaaagagtttgtagggaggggtgtagatagaagatttggagagaagaaattgga 9664312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 3752958 - 3752829
Alignment:
Q  127 gatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggggaggggtttagatagcagat 226  Q
    ||||||||||||||||| ||||  |||||||||  |||||| |||| |||||||||||||||||||||||||||||| ||||||||| | ||||| || |    
T  3752958 gatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtggatagtaggt 3752859  T
Q  227 ttttagagaagaatttggaggggtctggga 256  Q
    |||  |||||||| || || |||| |||||    
T  3752858 tttgtgagaagaagtttgaagggtttggga 3752829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 209
Target Start/End: Original strand, 4047253 - 4047362
Alignment:
Q  100 tatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagt 199  Q
    ||||||||||| || || |||| ||| |||||||  |||||||| ||||  |||||| |||| ||||| || |  |||||||| ||||||||||| ||||    
T  4047253 tatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttgtagaacaaaattttggaagaatgagt 4047352  T
Q  200 ttgtggggag 209  Q
    |||| |||||    
T  4047353 ttgtagggag 4047362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 13535490 - 13535336
Alignment:
Q  91 atagatggatatgaaacagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttgga 190  Q
    ||||||||||| |||| ||||||||||||||  || ||||||| ||| ||||| ||||  ||||||  ||||||||| || |||||||||||||||||||    
T  13535490 atagatggatacgaaagagaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttgga 13535391  T
Q  191 agaaagagtttgtggggaggggtttagatagcagatttttagagaagaatttgga 245  Q
    ||||||||||||| ||||||||| ||||||| ||||||  ||||||||| |||||    
T  13535390 agaaagagtttgtagggaggggtgtagatagaagatttggagagaagaaattgga 13535336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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