View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_2 (Length: 617)
Name: NF2261_low_2
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Complemental strand, 43349211 - 43348612
Alignment:
| Q |
1 |
atattgaacttgcatgaatcaaagaaagtttctctataattttaatttacttttacatataagctcctcatagaataaaaacaattctatactactaatt |
100 |
Q |
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| T |
43349211 |
atattgaacttgcatgaatcaaagaaagtttctctataattttaatttacttttacatataagctcctcatagaataaaaacaattctatactactaatt |
43349112 |
T |
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| Q |
101 |
atatataattaacaagacaattttcttcttctaaaataaaagaaagcatgaataagcacgcttacccaaaagccaatagcatgatcaccaacataatgat |
200 |
Q |
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| T |
43349111 |
atatataattaacaagacaattttcttcttataaaataaaagaaaacatgaataagcactcttacccaaaagccaatagcatgatcaccaacataatgat |
43349012 |
T |
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| Q |
201 |
agaattagagtattcttcttcttggtttaccatgagaattgttgatggaaaaaagtttctttaaaaccttcaacatcaccaacatactaggcttgttctt |
300 |
Q |
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| T |
43349011 |
agaattagagtattcttcttcttggtttaccatgagaattgttgatggaaaaaagtttctttaaaaccttcaacatcaccaacatactaggcttgttctt |
43348912 |
T |
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| Q |
301 |
ggtttgaataagagcattgttggtattatcaattgttaaggatctatactcaaccacatcctcattgaaaacctcccacaataaatccattggaacctct |
400 |
Q |
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| T |
43348911 |
ggtttgaataagagcattgttggtattatcaattgttaaggatctatactcaaccacatcctcattgaaaacctcccacaataaatccattggaacctct |
43348812 |
T |
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| Q |
401 |
tcatcttctaattcttttcttgttttctttccattttgtatagatgaaaagctattcctttgaccctttaagaccaaattttcttcatagcaatcttttt |
500 |
Q |
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| T |
43348811 |
tcatcttctaattcttttcttgttttctttccattttgtatagatgaaaagctattcctttgaccctttaagaccaaattttcttcatagcaatcttttt |
43348712 |
T |
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| Q |
501 |
gatctcttaggagttgttggtaggagttattagaagaagatgttgatgatgaattccaaagaggaggtgaatcaatgatatatgaataagtgtcattaat |
600 |
Q |
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| T |
43348711 |
gatctcttaggagttgttggtaggagttattagaagaagatgttgatgatgaattccaaagaggaggtgaatcaatgatatatgaataagtgtcattaat |
43348612 |
T |
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