View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_22 (Length: 334)
Name: NF2261_low_22
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 514213 - 514533
Alignment:
| Q |
1 |
tagatactaacattaaaaaaggagtgatggatgtctatgagatccaattaagtattcaaatataccgagagctctagtgtgaatgtt--aagtcttataa |
98 |
Q |
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| T |
514213 |
tagatactaacattaaaaaaggagtgatggatgtctatgagatccaattaagtattcaaatataccgagagctctagtgtgaatgttttaagtcttataa |
514312 |
T |
|
| Q |
99 |
ttttaaattgaatttaaatgaaatgcaatgtcgattggcgtaatagttttacaccgccatcaatcaaaatctagtgttttgccacaccacctcactcttg |
198 |
Q |
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| T |
514313 |
ttttaaattgaatttaaatgaaatgcaatatcgattggtgtaaaagttttacaccgtcatcaatcaaaatctagtgttttgccacaccatgtcactcttg |
514412 |
T |
|
| Q |
199 |
caaaggtataacatttcatgaactgtcatctaattatatatataacattgagcattggacatgcaacaactttaaaaactcttatgaagagtttgtacac |
298 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
514413 |
caaaggtatagcatttcatgaactgtcatctaattatagatatagcattaagcattggacatgcaacaactttaaaaactcttatgaagagtttgcacac |
514512 |
T |
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| Q |
299 |
ccggtttacaccaattgtgtg |
319 |
Q |
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|||||||||| |||||||||| |
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| T |
514513 |
ccggtttacatcaattgtgtg |
514533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 563083 - 562976
Alignment:
| Q |
1 |
tagatactaacattaaaaaaggagtgatggatgtctatgagatccaatta---agtattcaaatataccgagagctctagtgtgaatgt--taagtctta |
95 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||| |||| ||||| ||||||||| ||||||||| |
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| T |
563083 |
tagatactaacattaaaaaaagagtgatggatgtctatgagatccaattaagtagtatttaaatatacagagaactctactgtgaatgttgtaagtctta |
562984 |
T |
|
| Q |
96 |
taatttta |
103 |
Q |
| |
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|||||||| |
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| T |
562983 |
taatttta |
562976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 562130 - 562014
Alignment:
| Q |
209 |
acatttcatgaactgtcatctaattatatata------taacattgagcattggacatgcaacaactttaaaaactcttatgaagagtttgtacacccgg |
302 |
Q |
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|||||||||||| ||||||||||||||| ||| || ||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||| |
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| T |
562130 |
acatttcatgaattgtcatctaattatagataaagatatagcattggacattggacatgtaacaacattaaaaactcttatgaagagtttgcacacccga |
562031 |
T |
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| Q |
303 |
tttacaccaattgtgtg |
319 |
Q |
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|||||||||||| |||| |
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| T |
562030 |
tttacaccaattttgtg |
562014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 562980 - 562919
Alignment:
| Q |
145 |
ttttacaccgccatcaatcaaaatctagtgttttgccacaccacctcactcttgcaaaggta |
206 |
Q |
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||||||||| ||||||| |||||||| |||||||||| | ||||||||||||||||||||| |
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| T |
562980 |
ttttacacccacatcaattaaaatctactgttttgccatatcacctcactcttgcaaaggta |
562919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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