View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_24 (Length: 311)
Name: NF2261_low_24
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 28733026 - 28733323
Alignment:
| Q |
14 |
aacactctctttaattgcaaagatgaaaaatgaggtgagccattgtagagaatctgaatcacaggcattggaaacacttggtacaactcaaatgcaattg |
113 |
Q |
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| T |
28733026 |
aacactctctttaattgcaaagatgaaaaatgaggtgagccattgtagagaatctgaatcacaggcattggaaacagttggtacaactcaaatgcaattg |
28733125 |
T |
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| Q |
114 |
gaagctgcaaataagacagtggaaacgctccgattagaaggtgcaaaagcgtcagaagattaccaatccttagctttagagttagagaaatcaaggtctc |
213 |
Q |
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| T |
28733126 |
gaagctgcaaataagacagtggaaacgctccgattagaaggtgcaaaagcgtcagaagattaccaatccttagctttagagttagagaaatcaaggtctc |
28733225 |
T |
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| Q |
214 |
aagtaagctcactggaggaacttgtgagcaaacttcaggatgatttggtcagtggagtcggtttatctcctcgcttacctgcattggaagttgtagaa |
311 |
Q |
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| T |
28733226 |
aagtaagctcactggaggaacttgtgagcaaacttcaggatgatttggtcagtggagtcggtttatctcctcgcttacctgcattggaagttgtagaa |
28733323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 248
Target Start/End: Original strand, 22109981 - 22110127
Alignment:
| Q |
102 |
caaatgcaattggaagctgcaaataagacagtggaaacgctccgattagaaggtgcaaaagcgtcagaagattaccaatccttagctttagagttagaga |
201 |
Q |
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| T |
22109981 |
caaatgcaattggaaacggtaaataagacagtggaaacactccgatcagatggtctaaaagcaactgaagcttacaagtccttagctttggagttggagc |
22110080 |
T |
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| Q |
202 |
aatcaaggtctcaagtaagctcactggaggaacttgtgagcaaactt |
248 |
Q |
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| T |
22110081 |
aatcaagatctcaagcaaagtccttggaggaacttgtgaggaaactt |
22110127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 248
Target Start/End: Complemental strand, 40584608 - 40584462
Alignment:
| Q |
102 |
caaatgcaattggaagctgcaaataagacagtggaaacgctccgattagaaggtgcaaaagcgtcagaagattaccaatccttagctttagagttagaga |
201 |
Q |
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||||||||||||||| | | |||||||||||||||||| ||||||| ||| ||| |||||| | |||| |||| | ||||||||||| ||||| ||| |
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| T |
40584608 |
caaatgcaattggaaacggtaaataagacagtggaaacactccgatcagatggtctaaaagcaactgaagcttacaagtccttagctttggagttggagc |
40584509 |
T |
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| Q |
202 |
aatcaaggtctcaagtaagctcactggaggaacttgtgagcaaactt |
248 |
Q |
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| T |
40584508 |
aatcaagatctcaagcaaagtccttggaggaacttgtgaggaaactt |
40584462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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