View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_25 (Length: 307)
Name: NF2261_low_25
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 49221632 - 49221788
Alignment:
| Q |
19 |
ggattaacccaaaatgtcttaggtggaccaaaatttaggtggtccaccctgaaccttattaaaaaattcacttttaaccatttgatannnnnnnctcaaa |
118 |
Q |
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| T |
49221632 |
ggattaacccaaaatgtcttaggtggaccaaaatttaggtgatccaccgtaaaccttattaaaaaatttaattttaaccatttgat-tttttttcaaaaa |
49221730 |
T |
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| Q |
119 |
agaaggtcgttggatcgtgaaagcttattttatcttattgggaaccatcaccaactaa |
176 |
Q |
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| T |
49221731 |
agaaggtcattggatcgtgaaagcttattttatcttatagggaaccatcaccaactaa |
49221788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 6242628 - 6242474
Alignment:
| Q |
21 |
attaacccaaaatgtcttaggtggaccaaaatttaggtggtccaccctgaaccttattaaaaaattcacttttaaccatttgatannnnnnnctcaaaag |
120 |
Q |
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| T |
6242628 |
attaacctcaaatgtcttaagtggaccaagatttaggtggtccaccgtaaaccatattaaaaaatttaattttaaccatttgat-cttttttcttaaaag |
6242530 |
T |
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| Q |
121 |
aaggtcgttggatcgtgaaagcttattttatcttattgggaaccatcaccaactaa |
176 |
Q |
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| T |
6242529 |
agggtcgttggatcatgaaagccttttttatcttataggaaatcatcaccaactaa |
6242474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 29465882 - 29466036
Alignment:
| Q |
21 |
attaacccaaaatgtcttaggtggaccaaaatttaggtggtccaccctgaaccttattaaaaaattcacttttaaccatttgatannnnnnnctcaaaag |
120 |
Q |
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| T |
29465882 |
attaacctcaaatgtcttaagtggaccaagatttaggtggtccactgtaaaccatattaaaaaatttaattttaaccatttgat-cttttttcttaaaag |
29465980 |
T |
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| Q |
121 |
aaggtcgttggatcgtgaaagcttattttatcttattgggaaccatcaccaactaa |
176 |
Q |
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| T |
29465981 |
agggccgttggatcatgaaagcctattttatcttataggaaatcatcaccaactaa |
29466036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 40738329 - 40738474
Alignment:
| Q |
30 |
aaatgtcttaggtggaccaaaatttaggtggtccaccctgaaccttattaaaaaattcacttttaaccatttgatannnnnnnctcaaaagaaggtcgtt |
129 |
Q |
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| T |
40738329 |
aaatgtcttaagtgggccaagatttaggtggtccaccgtaaatcatattaaaaaatttaattttaaccatttgat-gttttttcttaaaagagggtcgtt |
40738427 |
T |
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| Q |
130 |
ggatcgtgaaagcttattttatcttattgggaaccatcaccaactaa |
176 |
Q |
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| T |
40738428 |
ggatcatgaaagcctattttatcttataggaaatcatcaccaactaa |
40738474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 34598857 - 34598929
Alignment:
| Q |
30 |
aaatgtcttaggtggaccaaaatttaggtggtccaccctgaaccttatt-aaaaaattcacttttaaccattt |
101 |
Q |
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| T |
34598857 |
aaatgtctaaggtggaccaagatttaggtggtccaccataaaccttattaaaaaaattaaattttaaccattt |
34598929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 3606970 - 3606818
Alignment:
| Q |
21 |
attaacccaaaatgtcttaggtggaccaaaatttaggtggtccaccctgaaccttattaaaaaattcacttttaaccatttgatannnnnnnctcaaaag |
120 |
Q |
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||||||| |||||||||| ||||||||| |||||||||||||||| | |||| |||||||||| | | ||||||||||||||| || ||||| |
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| T |
3606970 |
attaacctcaaatgtcttaagtggaccaagatttaggtggtccaccgtaaaccatattaaaaaaattaattttaaccatttgat-cttttttcttaaaag |
3606872 |
T |
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| Q |
121 |
aaggtcgttggatcgtgaaagcttattttatcttattgggaaccatcaccaact |
174 |
Q |
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| T |
3606871 |
agggccgttggatcatgaaagcctattttatcttataggaaatcatcaccaact |
3606818 |
T |
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