View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_26 (Length: 301)
Name: NF2261_low_26
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 18350778 - 18351053
Alignment:
| Q |
1 |
acttatacgaaaacaatttagcttaatttcatcttttgctataatctgtaaattaagttataagtttatccaaatagggtctatataagatttggggcta |
100 |
Q |
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| T |
18350778 |
acttatacgaaaacaatttagcttaatttcgtcttttgctataatctgtaaattaagtt----gtttatccaaatagggtctatataagatttggggc-- |
18350871 |
T |
|
| Q |
101 |
atatcttaatannnnnnnnatgtgattttgaagattggtgaagtgggagaattatctgagatatttcagtggaaaggtgaagttcaaagaggactaccag |
200 |
Q |
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| T |
18350872 |
--atcttaatatttttttgatgtgattttgaagattggtgaagtgggagaattatctgagatatttcagtggaaaggtgaagttcaaaggggactaccag |
18350969 |
T |
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| Q |
201 |
attttaaagaggaagaaaaagttcatcttggagaagagctttccgatgtattgctttaccttgtgaggctctctgacatctgtg |
284 |
Q |
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| T |
18350970 |
attttaaagaggaagaaaaagttcatcttggagaagagctttccgatgtattgctttaccttgtgaggctctctgacatctgtg |
18351053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 30180049 - 30180009
Alignment:
| Q |
2 |
cttatacgaaaacaatttagcttaatttcatcttttgctat |
42 |
Q |
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| T |
30180049 |
cttatacgaaaacaatttaactttattttatcttttgctat |
30180009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 11431943 - 11431994
Alignment:
| Q |
6 |
tacgaaaacaatttagcttaatttcatcttttgctataatctgtaaattaag |
57 |
Q |
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| T |
11431943 |
tacgaaaacaatttagtttaacttcatctttttatataagctgtaaattaag |
11431994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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