View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_3 (Length: 608)
Name: NF2261_low_3
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 1739259 - 1739739
Alignment:
| Q |
1 |
tgtttttattttcttgagaaatcaatatnnnnnnngaattgacaaatcaattacatgtgtcataaaagaactgagaaatcaagaaaaccaatannnnnnn |
100 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1739259 |
tgtttttattttcttgagaaatcaatataaaaaaagaattgacaaatcaattacatgtgtcataaaagaactgagaaatcaagaaaaccaatattttttt |
1739358 |
T |
|
| Q |
101 |
actctttatggagttatttgtattttttagaatatgtttagatatatagatacataaccgttttgctaagaactctatgacagagactgtctgtggaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1739359 |
actctttatggagttatttgtattttttagaatatgtttagatatatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatg |
1739458 |
T |
|
| Q |
201 |
tatgaatcatcccattctttatatccatctcttgtcccactatgctcaaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcc |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1739459 |
tatgaatcatcccattctgtatatccatctcttgtcccactatgctcaaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcc |
1739558 |
T |
|
| Q |
301 |
catgcctactgcaagttacaaagatatacttgattagtagtcgattcttgaatcagataccaagttt-aaaacaaaaatcacgtgatgtttaatggcaag |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| |||||| |||||||||||||| |
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| T |
1739559 |
catgcctactgcaagttacaaagatatacttgattagtagttgattcttgaatcagataccaagtttaaaaaaaaaaaacacgtgttgtttaatggcaag |
1739658 |
T |
|
| Q |
400 |
agtttaaccttttataacttaaaagtatataatttaaatccgctcaatgactattgtagtaaaatgacgattaatgttact |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1739659 |
agtttaaccttttataacttaaaagtatataatttaaatccgctcaatgactattgcagtaaaatgacgattaatgttact |
1739739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 137 - 318
Target Start/End: Original strand, 1717925 - 1718106
Alignment:
| Q |
137 |
tttagatatatagatacataaccgttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctttatatccatctcttgtc |
236 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||||||| |
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|
| T |
1717925 |
tttagatatatagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtc |
1718024 |
T |
|
| Q |
237 |
ccactatgctcaaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagtta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| |
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|
| T |
1718025 |
ccactatgctcaaaaccattttgagaaccttcaactgcatgcaaatccacaatcactttcatcccatgcttactgcaagtta |
1718106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 156 - 328
Target Start/End: Original strand, 1754878 - 1755050
Alignment:
| Q |
156 |
aaccgttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctttatatccatctcttgtcccactatgctcaaaaccat |
255 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||||||||| || |||||||| ||| |||||||| || ||||||||||||| ||||| || ||| ||||| |
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|
| T |
1754878 |
aacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctcttgttccactgtgatcattaccat |
1754977 |
T |
|
| Q |
256 |
tttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagttacaaagatata |
328 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| | ||| || ||||||||||||| |
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|
| T |
1754978 |
tttgagaaccttcaactgcatgcaagtccacaatcactttcatcccatggattctgtaaattacaaagatata |
1755050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 147 - 328
Target Start/End: Original strand, 1749254 - 1749435
Alignment:
| Q |
147 |
tagatacataaccgttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctttatatccatctcttgtcccactatgct |
246 |
Q |
| |
|
|||||||| |||| || ||||||||| || || |||| |||||||| || ||||| |||||| |||||||| |||||||||||||||| |||||||| | |
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|
| T |
1749254 |
tagatacaaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgttccactatgtt |
1749353 |
T |
|
| Q |
247 |
caaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagttacaaagatata |
328 |
Q |
| |
|
|| ||||||||||||||||||| |||||||| || ||||||||||||||| |||| | |||||| ||| ||||||||| |
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|
| T |
1749354 |
cattgccattttgagaaccttcaacagcatgcaaatctacaatcactttcatctcatgatttctgcaatttagaaagatata |
1749435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 38733119 - 38733158
Alignment:
| Q |
338 |
tagtcgattcttgaatcagataccaagttta-aaacaaaa |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
38733119 |
tagtcgattcttgaatcagataccaagtttacaaacaaaa |
38733158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 593
Target Start/End: Original strand, 1739823 - 1739852
Alignment:
| Q |
564 |
tgttgcactaaagggcacgttacatgttat |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1739823 |
tgttgcactaaagggcacgttacatgttat |
1739852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 377
Target Start/End: Original strand, 19421402 - 19421441
Alignment:
| Q |
338 |
tagtcgattcttgaatcagataccaagtttaaaacaaaaa |
377 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
19421402 |
tagtcgattcttgaatcagataccgagtttaaaaaaaaaa |
19421441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 377
Target Start/End: Complemental strand, 39145682 - 39145643
Alignment:
| Q |
338 |
tagtcgattcttgaatcagataccaagtttaaaacaaaaa |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||| |
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|
| T |
39145682 |
tagtcgattcttgaatcagataccaagttttaaaaaaaaa |
39145643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 27704172 - 27704212
Alignment:
| Q |
338 |
tagtcgattcttgaatcagataccaagtttaaaacaaaaat |
378 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| |||||| |
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|
| T |
27704172 |
tagtcgattcttgaatcagataccgagttttaaaaaaaaat |
27704212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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