View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_34 (Length: 236)
Name: NF2261_low_34
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 30897666 - 30897481
Alignment:
| Q |
36 |
atatgttcacatttcatggatttaccatcaaactttaaactaattgaccaaacaaagttaaattaaaagaagtttgttggccatagtccatgaactatga |
135 |
Q |
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| T |
30897666 |
atatgttcacatttcatggatttaccatcaaactttaaactaattgaccaaacaaagttaaattaaaagaagtttgttggccatactccatgaattgtga |
30897567 |
T |
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| Q |
136 |
acatatctttgcccacattctatgtatgccaaacatagtcgcgtgattgtgaagatagatatttcattcatgcatacagttgttgt |
221 |
Q |
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| T |
30897566 |
acatatctttgcccacattctatgtatgccaaacatagtcgcgtgattgtgaagatagatatttcattcatgcatacagttgttgt |
30897481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 30904666 - 30904514
Alignment:
| Q |
1 |
tttacatgagtgcatatcaaaacaatcattctaaaatatgttcacatttcatggattt-accatcaaactttaaactaattgaccaaacaaagttaaatt |
99 |
Q |
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| T |
30904666 |
tttacatgagtgcgtatcatgacaatcattccaaaatatgtttacagtccatggatttgaccaccaaactttaaaatgattggctaaacaagg-----tt |
30904572 |
T |
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| Q |
100 |
aaaagaagtttgttggccatagtccatgaactatgaacatatctttgcccacattcta |
157 |
Q |
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| T |
30904571 |
aaaagaaatttgatggccacaatccatgtattgtaaacatatctttggccacattcta |
30904514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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