View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2261_low_36 (Length: 233)

Name: NF2261_low_36
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2261_low_36
NF2261_low_36
[»] chr7 (2 HSPs)
chr7 (19-214)||(16771868-16772063)
chr7 (138-214)||(27151998-27152074)
[»] chr3 (7 HSPs)
chr3 (130-207)||(3661526-3661602)
chr3 (137-214)||(15478582-15478659)
chr3 (141-214)||(38649083-38649156)
chr3 (141-214)||(26434599-26434672)
chr3 (141-192)||(53610226-53610277)
chr3 (141-214)||(11895321-11895394)
chr3 (137-214)||(23422570-23422647)
[»] chr2 (4 HSPs)
chr2 (130-207)||(39010690-39010766)
chr2 (141-214)||(14655581-14655654)
chr2 (141-214)||(42405121-42405194)
chr2 (141-214)||(35137117-35137190)
[»] chr8 (3 HSPs)
chr8 (130-213)||(26710615-26710697)
chr8 (141-214)||(23134486-23134559)
chr8 (141-192)||(38346643-38346694)
[»] chr6 (2 HSPs)
chr6 (130-207)||(13028944-13029020)
chr6 (123-214)||(24895743-24895832)
[»] chr1 (3 HSPs)
chr1 (141-214)||(50238460-50238533)
chr1 (165-214)||(5194956-5195005)
chr1 (141-214)||(20283022-20283095)
[»] scaffold0214 (1 HSPs)
scaffold0214 (143-200)||(7136-7193)
[»] chr5 (2 HSPs)
chr5 (141-214)||(7811997-7812070)
chr5 (141-189)||(23943234-23943282)
[»] chr4 (1 HSPs)
chr4 (143-213)||(7589534-7589604)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 16772063 - 16771868
Alignment:
Q  19 cacagagacaatccaagtgaatttaacagcaaatgaaggacaccatgaagcctccaatgactgcaaggaggatatggtcacctagnnnnnnncctgacat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||    
T  16772063 cacagagacaatccaagtgaatttaacagcaaatgaaggacaccatgaagcctccaatgattgcaaggaggatatggtcacctagtttttttcctgacat 16771964  T
Q  119 acattcaatctttcattatttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16771963 acattcaatctttcattatttattatggaagctctcttagatacttcaatcctctcttggaatatcataggggcacacaataataatgcaagaaga 16771868  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 27151998 - 27152074
Alignment:
Q  138 ttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    |||||||||||||  | || |||||||||| ||||||||||||| ||||||||||| |||| |||||||| ||||||    
T  27151998 ttattatggaagccttatttgatacttcaaacctctcttggaatgtcagaggggcaaacaacaataatgccagaaga 27152074  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 3661602 - 3661526
Alignment:
Q  130 ttcattatttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgc 207  Q
    |||||||||| |||||||||||||  |||||  ||||||||||||||||||||||||||||||||| || ||||||||    
T  3661602 ttcattattt-ttatggaagctctactagatgtttcaatcctctcttggaatatcagaggggcacaaaacaataatgc 3661526  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 15478659 - 15478582
Alignment:
Q  137 tttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    ||||||||||| |||||  |||||| |||||||||||||||||| |||||||||||| ||||||| ||||| ||||||    
T  15478659 tttattatggatgctctgatagatatttcaatcctctcttggaacatcagaggggcatacaataacaatgctagaaga 15478582  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 38649156 - 38649083
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    |||||||||| || || ||||| |||||||||||||| |||||||||||||| |||||||| ||||| ||||||    
T  38649156 ttatggaagcccttttcgatacatcaatcctctcttgaaatatcagaggggctcacaataacaatgccagaaga 38649083  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 26434672 - 26434599
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    |||||||||| ||| |||||| | | ||||||||||||||||| |||||||| |||||||| ||||| ||||||    
T  26434672 ttatggaagcactcctagatattaccatcctctcttggaatattagaggggctcacaataacaatgctagaaga 26434599  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 53610277 - 53610226
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggc 192  Q
    ||||||||||| ||  |||||||||||| |||||||||||||||||||||||    
T  53610277 ttatggaagctttcaaagatacttcaattctctcttggaatatcagaggggc 53610226  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 11895321 - 11895394
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    |||||||||||||| | ||||   | ||||||||||||||||| |||||||| || ||||| |||| |||||||    
T  11895321 ttatggaagctctccttgatatcaccatcctctcttggaatattagaggggctcaaaataacaatggaagaaga 11895394  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 23422570 - 23422647
Alignment:
Q  137 tttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    ||||| ||||||||||| || |||||| |  ||||||||||||  || |||||||||| || ||||||| ||||||||    
T  23422570 tttatcatggaagctctttttgatactactttcctctcttggaccataagaggggcactcagtaataattcaagaaga 23422647  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 39010690 - 39010766
Alignment:
Q  130 ttcattatttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgc 207  Q
    |||||||||| |||||||||||||  |||||  ||||||||||||||||||||||||||||||||| || ||||||||    
T  39010690 ttcattattt-ttatggaagctctactagatgtttcaatcctctcttggaatatcagaggggcacaaaacaataatgc 39010766  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 14655654 - 14655581
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    |||||||||||||| | |||| | | ||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  14655654 ttatggaagctctccttgatattaccatcctctcttggaatattagaggggctcacaataacaatgcaagaaga 14655581  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 42405194 - 42405121
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    ||||||| |||||  |||||| |||||||||||||||||| |||||||||||| ||||||| ||||| ||||||    
T  42405194 ttatggatgctctgatagatatttcaatcctctcttggaacatcagaggggcatacaataacaatgctagaaga 42405121  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 35137190 - 35137117
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    |||||||||||||  ||||||  || ||||||||||||||||| |||||||| |  |||| |||||||| ||||    
T  35137190 ttatggaagctcttctagatatctctatcctctcttggaatattagaggggctctaaatattaatgcaaaaaga 35137117  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 26710697 - 26710615
Alignment:
Q  130 ttcattatttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaag 213  Q
    |||||||||| |||||||||||||  | ||||||||||||| |||||||||||| |||||||| || || ||||||||||||||    
T  26710697 ttcattattt-ttatggaagctcttctcgatacttcaatccactcttggaatattagaggggctcaaaacaataatgcaagaag 26710615  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 23134559 - 23134486
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    |||||||||||||| | ||||   | ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  23134559 ttatggaagctctccttgatatcaccatcctctcttggaatattagaggggctcaaaataacaatgcaagaaga 23134486  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 38346643 - 38346694
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggc 192  Q
    |||||||||||||| || ||||  ||||||||||||||||||| ||||||||    
T  38346643 ttatggaagctctcctaaatacaacaatcctctcttggaatattagaggggc 38346694  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 13029020 - 13028944
Alignment:
Q  130 ttcattatttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgc 207  Q
    |||||||||| |||||||||| ||  |||||  ||||||||||||||||||||||||||||||||| || ||||||||    
T  13029020 ttcattattt-ttatggaagcacttctagatgtttcaatcctctcttggaatatcagaggggcacaaaacaataatgc 13028944  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 24895832 - 24895743
Alignment:
Q  123 tcaatctttcattatttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    ||||||||||  ||||||| ||||||||||| || |||||| || ||||||||||||| || |||||||||| || ||||||| ||||||||    
T  24895832 tcaatctttc--tatttatcatggaagctctttttgatactacattcctctcttggaacataagaggggcactcagtaataattcaagaaga 24895743  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 50238533 - 50238460
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    ||||||| |||||| |||||||||| |||||||||||||| ||||||||||| || ||||| ||| | ||||||    
T  50238533 ttatggatgctctcctagatacttctatcctctcttggaacatcagaggggctcataataacaattccagaaga 50238460  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 5195005 - 5194956
Alignment:
Q  165 caatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    |||||||||||||||||||||||||||| |||||||| || || ||||||    
T  5195005 caatcctctcttggaatatcagaggggctcacaataacaaagctagaaga 5194956  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 20283022 - 20283095
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    |||||||||||||| | ||||   | ||||||||||||||||| |||||||| || ||||| |||| |||||||    
T  20283022 ttatggaagctctccttgatatcaccatcctctcttggaatattagaggggctcaaaataacaatggaagaaga 20283095  T

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Target: scaffold0214 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 7136 - 7193
Alignment:
Q  143 atggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaata 200  Q
    |||||||||||| | || |  ||||||||||||||||||||||||||||| |||||||    
T  7136 atggaagctctccttgacatctcaatcctctcttggaatatcagaggggctcacaata 7193  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 7811997 - 7812070
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 214  Q
    |||||||||| ||| |||||| ||| |||||||||||||| || |||||||| || ||| ||||||| ||||||    
T  7811997 ttatggaagcgctcctagatatttccatcctctcttggaacattagaggggctcaaaatcataatgctagaaga 7812070  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 23943234 - 23943282
Alignment:
Q  141 ttatggaagctctcttagatacttcaatcctctcttggaatatcagagg 189  Q
    ||||||||||| ||  |||||||||||| ||||| ||||||||||||||    
T  23943234 ttatggaagctttcaaagatacttcaattctctcctggaatatcagagg 23943282  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 7589604 - 7589534
Alignment:
Q  143 atggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaag 213  Q
    |||||||||||  |  ||| |||| |||||||||||||||| |||||||| || || ||||||||||||||    
T  7589604 atggaagctctactcaatatttcactcctctcttggaatattagaggggctcaaaacaataatgcaagaag 7589534  T

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