View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2261_low_4 (Length: 587)
Name: NF2261_low_4
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 11 - 570
Target Start/End: Original strand, 513611 - 514164
Alignment:
| Q |
11 |
atcatcaggaaaaccatcatcattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaannnnnnngtttgggggaatggc |
110 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
513611 |
atcaacaggaaaaccatcaccattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaatttttttgtttgggggaatggc |
513710 |
T |
|
| Q |
111 |
gtcggagcaggtttgtgagaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctacgatatac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
513711 |
gtcggagcaggtttgtgagaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctaagatattc |
513810 |
T |
|
| Q |
211 |
aaataaaaaatggtaagaatgtaatattgatcagttgcaatatgcgataaattatagaatacaagattaaacccaaaaccattagccacaatgcaccact |
310 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
513811 |
aaataaaaaatggtaagaatgt-----tgatcagttgcaatatgtgataaattatagaatacaagattaaacccaaaaccattagccacaatgcaccact |
513905 |
T |
|
| Q |
311 |
gttcaaataaagtctaaattgtcattaaaaaatatataatttctaaattccctaaccttaaaatctatctcatatgacagaagcaatacctttaatgagt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
513906 |
gttcaaataaagtctaaattgtcattaaaaaag-tataatttctaaattccctaaccttaaaatctatcttatatgacagaagcaatacctttaatgagt |
514004 |
T |
|
| Q |
411 |
catttaactatagatgaaactttggtataaactttaactgtaatgcttaatgatctatacaaatgttctaacattgagacttatcatatagggcacgaaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
514005 |
catttaactatagatgaaactttggtataaactttaactgtaatgcttaatgatctatacaaatgttctaacattgagacttatcatatagggcacgaaa |
514104 |
T |
|
| Q |
511 |
caatatagagcaaggcaacctacatttcaaatatcattttttattaaaattaattaatag |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
514105 |
caatatagagcaaggcaacctacatttcaaatatcattttttattaaaattaattaatag |
514164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 563526 - 563167
Alignment:
| Q |
11 |
atcatcaggaaaaccatcatcattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaannnnnnngtttgggggaatggc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
563526 |
atcaacaggaaaaccatcatcattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaatttttttgtttgggggaatggc |
563427 |
T |
|
| Q |
111 |
gtcggagcaggtttgtgagaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctacgatata- |
209 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |||| ||||||| ||||||||||| |||||||||||||||||||||||| ||| || |
|
|
| T |
563426 |
gtcggagcaggtttgtga------agctcaacgcaccacgggctgactcgtcttgaaatttgcgagatttgaaattcatcccaattaacctatgatgtat |
563333 |
T |
|
| Q |
210 |
-caaataaaaaatggtaagaatgtaatattgatcagttgcaatatgcgataaattatagaatacaagattaaacccaaaaccattagccacaatgcacca |
308 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
563332 |
tcaaataaaaaatggtaagaatacaatattgatcatttgcaatatgtgataaattattgaatacaagattaaacccaaaaccattagccagagtgcacca |
563233 |
T |
|
| Q |
309 |
ctgttcaaataaagtctaaattgtcattaaaaaatatataatttctaaattccctaaccttaaaat |
374 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
563232 |
ttgttcaaataaagtttaaattgtcattaaaaaatgtataatttataaattccctaaccttaaaat |
563167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 566687 - 566608
Alignment:
| Q |
129 |
gaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctacgatat |
208 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
566687 |
gaaataagttcaacccaccacataccgactcgtcttggaatttgtgagacttgaaattcatcccagttaacctatgatat |
566608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University