View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_41 (Length: 224)
Name: NF2261_low_41
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 11557232 - 11557024
Alignment:
| Q |
1 |
catttcttcattcatctgcaaccnnnnnnnntatttaaaatttggcaaaagaattaattaataatcaagaagcttaacataaatctaagtttgcaaaaaa |
100 |
Q |
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| T |
11557232 |
catttcttcattcatctgcaaccaaaaaaa-tatttaaaatttggcaaaagaattaattaataatcaagaagcttaacataaatctaagtttgcaaaaaa |
11557134 |
T |
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| Q |
101 |
tattattataccagtaataaagctccatctcgacttcctcgagaaccaatttcaaacactttgatagtttcagctttggtaacaattgtagggaacaagt |
200 |
Q |
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| T |
11557133 |
tattattataccagtaataaagctccatctcgacttcctcgagaaccgatttcaaacactttgatagtttcagctttggtgacaattgtagggaacaggt |
11557034 |
T |
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| Q |
201 |
ttgtccattt |
210 |
Q |
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|||||||||| |
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| T |
11557033 |
ttgtccattt |
11557024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 22832882 - 22833057
Alignment:
| Q |
35 |
ttaaaatttggcaaaagaattaattaataatcaagaagcttaacataaatctaagtttgcaaaaaatattattataccagtaataaagctccatctcgac |
134 |
Q |
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| T |
22832882 |
ttaaaatttgggaaaagaattaattaataatctagaagcttaacataaatctaagtttgcaaaaaaaattattataccagtaataaagctccatctcgac |
22832981 |
T |
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| Q |
135 |
ttcctcgagaaccaatttcaaacactttgatagtttcagctttggtaacaattgtagggaacaagtttgtccattt |
210 |
Q |
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| T |
22832982 |
ttcctcgagaactgatttcaaacactttgatagtttctgctttggtaacaattgtagggaacaagtttgtccattt |
22833057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 33 - 210
Target Start/End: Original strand, 22824059 - 22824235
Alignment:
| Q |
33 |
atttaaaatttggcaaaagaattaattaataatcaagaagcttaacataaatctaagtttgcaaaaaatattattataccagtaataaagctccatctcg |
132 |
Q |
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| T |
22824059 |
atttaaaatttgggaaaagaattaattaataatcaagaagcttaacataaatccaagtttgcaaaaaaaat-attataccaataataaagctccatctcg |
22824157 |
T |
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| Q |
133 |
acttcctcgagaaccaatttcaaacactttgatagtttcagctttggtaacaattgtagggaacaagtttgtccattt |
210 |
Q |
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| T |
22824158 |
acttcctcgagaactgatttcaaacactttgatagtttcagctttggtaacaattgttgggaacaagtttgtccattt |
22824235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 61 - 210
Target Start/End: Complemental strand, 11543351 - 11543198
Alignment:
| Q |
61 |
ataatcaagaagcttaacataaatctaagtttgcaaaaaata----ttattataccagtaataaagctccatctcgacttcctcgagaaccaatttcaaa |
156 |
Q |
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||||||||||||||| | ||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |
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| T |
11543351 |
ataatcaagaagcttgaaataaatctatgtttgcaaaaaaaaaaaattattataccagtaataaagctccatctcgacttcctggtgaaccgatttcaaa |
11543252 |
T |
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| Q |
157 |
cactttgatagtttcagctttggtaacaattgtagggaacaagtttgtccattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11543251 |
cactttgatagtttcagctttggtaacaattgtagggaacaagtttgtccattt |
11543198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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