View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_5 (Length: 527)
Name: NF2261_low_5
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 9e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 32032019 - 32031789
Alignment:
| Q |
16 |
acatttgtttccacatgtatcttcacttactctatcaccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaattcactt |
115 |
Q |
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| T |
32032019 |
acatttgtttccacatgcatcttcacttacactatcaccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaattcactt |
32031920 |
T |
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| Q |
116 |
gctttgcatac---tcctaaaggcttagcattacacttattgctccaagcaaatgttccattctccaaaggacaaccaaaacattgattatcctcacaaa |
212 |
Q |
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||||||||||| ||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
32031919 |
gctttgcatactcctcctaaaggcttagcattacatttattactccaaccaaatattccattctccaatggacaaccaacacattgattatcctcacaaa |
32031820 |
T |
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| Q |
213 |
gtccaaattttccacatctctctggcaattg |
243 |
Q |
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| T |
32031819 |
gcccaaatttcccacatctctcaggcaattg |
32031789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 32065159 - 32064915
Alignment:
| Q |
16 |
acatttgtttccacatgtatcttcacttactctatcaccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaattcactt |
115 |
Q |
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||||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32065159 |
acatttgtttccacatgcatcttcacttactatatcaccactagtgtatttgttcatgtaatgctcaactccttcaattttgtagtaatgaaattcactt |
32065060 |
T |
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| Q |
116 |
gctttgcatac---tcctaaaggcttagcattacacttattgctccaagcaaatgttccattctccaaaggacaaccaaaacattgattatcctcacaaa |
212 |
Q |
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| T |
32065059 |
gctttgcatactcctcctaaaggcttagggctacacttattactccaaccaaatattccattctccaatggacaaccaaaacattgattatcctcacaaa |
32064960 |
T |
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| Q |
213 |
gtccaaattttccacatctctctggcaattgacactcactctcat |
257 |
Q |
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| T |
32064959 |
gcccaaattccccacatctctctggcaattgacactcactctcat |
32064915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 40 - 303
Target Start/End: Complemental strand, 32072458 - 32072195
Alignment:
| Q |
40 |
acttactctatcaccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaattcacttgctttgcatactcctaaaggctta |
139 |
Q |
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|||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |
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| T |
32072458 |
acttactctatcaccaacagtgtatttgctcatataatgctcaactccttcaattttgtagtaatgaaactcacttgctttgcatactactacaggctta |
32072359 |
T |
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| Q |
140 |
gcattacacttattgctccaagcaaatgttccattctccaaaggacaaccaaaacattgattatcctcacaaagtccaaattttccacatctctctggca |
239 |
Q |
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||| |||| ||||||||| || || |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
32072358 |
gcactacaattattgctcgaacttaagattccattctccaaaggacaaccaacacattgattatcctcacaaagcccaaattttccacatctctttggca |
32072259 |
T |
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| Q |
240 |
attgacactcactctcataaaaaattctatcaaagagagtgtacataacttgccaaacaccatc |
303 |
Q |
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||||||| |||||||||| |||| |||||||||||||||||| | |||| |||||||||||| |
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| T |
32072258 |
attgacattcactctcatcaaaatctctatcaaagagagtgtatgtcactttccaaacaccatc |
32072195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 315 - 513
Target Start/End: Complemental strand, 32075798 - 32075598
Alignment:
| Q |
315 |
gaaaaatcactatcaccgagagtaagacatatgctactatgatatcttcttatttgcctaattggttgagtctggcaannnnnnn--ctatttttgggtc |
412 |
Q |
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||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
32075798 |
gaaaaatcaatatcgccgagagtaagacagatgctactatgatatcttcttatttgtctaattggttgagtctggcaatttttttttctatttttgggtc |
32075699 |
T |
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| Q |
413 |
aaagagtaggatacctgaaaatgcacctcacatagaaataattcaaaataccttttgttggactgcacaaaagaaataaacacaaacaacaattgttcca |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32075698 |
aaagagtaggatacctgaaaatgcacctcacatagaaataattcaaaataccttttgttggactgcacaaaagaaataaacacaaacaacaattgttcca |
32075599 |
T |
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| Q |
513 |
t |
513 |
Q |
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| T |
32075598 |
t |
32075598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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