View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2261_low_8 (Length: 460)
Name: NF2261_low_8
Description: NF2261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2261_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 21 - 452
Target Start/End: Original strand, 38110604 - 38111021
Alignment:
| Q |
21 |
caatcaatcatccaaagaatattcttaccagacaatccctctatcgccatatatagagctaattcaacaagtatatgatacctaacaccaaaaagaaagt |
120 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38110604 |
caatcaattatccaaagaatattcttaccagacaatacctctatcgccata----gagctaattcaagaagtatatgatacctaacaccaaaaagaaagt |
38110699 |
T |
|
| Q |
121 |
atgatatgatatgatatgataccttaccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttga |
220 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38110700 |
atg----------atatgataccttaccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttga |
38110789 |
T |
|
| Q |
221 |
ccacgttctcttgcccattgtacatatttatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtannnnnnngact |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38110790 |
ccacgttctcttgcccattgtacatatttatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtatttttttgact |
38110889 |
T |
|
| Q |
321 |
ctgatatcacaaaatctaatccctacatacatatgcaaatattattaaacgaaaattccaactatgatgtaaaaatatcgtggaataacgggaacaaatt |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38110890 |
ctgatatcacaaaatctaatccctacatacatatgcaaatattattaaacgaaaattccaactatgatgtaaaaatatcgtggaataacgggaacaaatt |
38110989 |
T |
|
| Q |
421 |
ttcnnnnnnnntaacacactttggcctttgct |
452 |
Q |
| |
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||| ||||||||||||||| ||||| |
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| T |
38110990 |
ttcaaaaaaaataacacactttggccattgct |
38111021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 145 - 345
Target Start/End: Original strand, 38085615 - 38085815
Alignment:
| Q |
145 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
244 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| || ||||||||||||| ||||||| || ||| |
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|
| T |
38085615 |
taccttaacatgatttttgtagtattgcttaacaacggggtgtgtaaagaagtcatcatcgtttttgatattttgaccacgttcttttgcccactgcaca |
38085714 |
T |
|
| Q |
245 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtannnnnnngactctgatatcacaaaatctaatccct |
344 |
Q |
| |
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||||| | || ||||| ||| ||||||||||||||||||||| ||||||||||| |||||| || | |||||||||||||||||| ||| ||| |
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| T |
38085715 |
tatttgttcttgcctccaaaatcattccaattattcaccaagctaagtataagtttcactccatatttgcttgcctctgatatcacaaaatccaatgcct |
38085814 |
T |
|
| Q |
345 |
a |
345 |
Q |
| |
|
| |
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|
| T |
38085815 |
a |
38085815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 145 - 363
Target Start/End: Original strand, 38142280 - 38142498
Alignment:
| Q |
145 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
244 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| || ||||||||| ||||||||||||||||||||| || ||| |
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|
| T |
38142280 |
taccttaacattgtttttgtagtattgcttaacaagaggattaataaagaagtcatcttcaattttgacattttgaccacgttctcttgcccactgcaca |
38142379 |
T |
|
| Q |
245 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtannnnnnngactctgatatcacaaaatctaatccct |
344 |
Q |
| |
|
||||| | ||| ||||| ||| |||||||||||||||| |||| |||||||||| |||||| || | |||||||||||||||||| ||||||| |
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|
| T |
38142380 |
tatttctttttgcctccaaaatcattccaattattcactaagctcagtataagtttcactccatatttgtttgcctctgatatcacaaaatccaatccct |
38142479 |
T |
|
| Q |
345 |
acatacatatgcaaatatt |
363 |
Q |
| |
|
|| |||| ||||||||||| |
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|
| T |
38142480 |
acgtacacatgcaaatatt |
38142498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 145 - 363
Target Start/End: Original strand, 38155626 - 38155844
Alignment:
| Q |
145 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
244 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || | ||||||||||||| || ||||||||| ||||||||||||||||||||| || ||| |
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|
| T |
38155626 |
taccttaacattgtttttgtagtattgcttaacaagagggttaataaagaagtcatcttcaattttgacattttgaccacgttctcttgcccactgcaca |
38155725 |
T |
|
| Q |
245 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtannnnnnngactctgatatcacaaaatctaatccct |
344 |
Q |
| |
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||||| | ||| ||||| ||| |||||||||||||||| |||| |||||||||| |||||| || | |||||||||||||||||| || |||| |
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|
| T |
38155726 |
tatttctttttgcctccaaaatcattccaattattcactaagctcagtataagtttcactccatattttcttgcctctgatatcacaaaatccaaaccct |
38155825 |
T |
|
| Q |
345 |
acatacatatgcaaatatt |
363 |
Q |
| |
|
||||||| |||||| |||| |
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|
| T |
38155826 |
acatacacatgcaagtatt |
38155844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 349
Target Start/End: Original strand, 38090602 - 38090802
Alignment:
| Q |
149 |
ttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtacatatt |
248 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || |||||||||||||| ||||| |||| | | ||||| |||||||||||||||| ||||||| |
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|
| T |
38090602 |
ttaacatgatttttgtagtattgcttaacaagagggtgtgtaaagaagtcgtcgtcattttttatgttatgaccgtgttctcttgcccattgaacatatt |
38090701 |
T |
|
| Q |
249 |
tatgttttcctcccaaagcattccaattattcaccaagccaagtataagttgcactccgtannnnnnngactctgatatcacaaaatctaatccctacat |
348 |
Q |
| |
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| | ||| ||||| ||| |||||||||||| | |||| ||||| | || |||||| || | |||||||||||||||||||||||||| ||| |
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|
| T |
38090702 |
tgtttttgcctccaaaattattccaattattggctaagcttagtatcaatttcactccatatttgcttgcctctgatatcacaaaatctaatccctgcat |
38090801 |
T |
|
| Q |
349 |
a |
349 |
Q |
| |
|
| |
|
|
| T |
38090802 |
a |
38090802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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