View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2262-Insertion-3 (Length: 691)

Name: NF2262-Insertion-3
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2262-Insertion-3
NF2262-Insertion-3
[»] chr2 (1 HSPs)
chr2 (8-691)||(38864693-38865377)


Alignment Details
Target: chr2 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 8 - 691
Target Start/End: Original strand, 38864693 - 38865377
Alignment:
Q  8 ctaattcgactgacaaatatcaagattgttaaactggatatttgtgttcgaacttgaaacctctcatttgatatctgtgtacgtttcatgtggtatttat 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  38864693 ctaactcgactgacaaatatcaagattgttaaactggatatttgtgttcgaacttgaaacctctcatttgatatctgtgtacgtttaa-gtggtatttat 38864791  T
Q  108 caatttatttagggaaacaactcctcgttcccatactaaactccacctgctagcatagagttcatactgataagagggcccctcaatcccactctgctga 207  Q
    |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38864792 caatttatttagggaaacaactcctcatttccatactaaaccccacctgctagcatagagttcatactgataagagggcccctcaatcccactctgctga 38864891  T
Q  208 atttggaaccccatgctccttattttcaacaattcctttgtcttgaaagttgaccgtatggtctcctggtgcgtgtcttggactagagaaatttctttat 307  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |    
T  38864892 atttggaa-cccatgctccttattttcaacaattcctttgtcttgaaagttgaccgtatggtctcctggtgcgtgtcttggactagagaaatt------t 38864984  T
Q  308 cattttcggtgattactactgcagttggatatggttgggttgcatcttgtggctaataatatatac---nnnnnnnnaatgcaatctggtaaatacatta 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||           |||||||||||||||||||||||    
T  38864985 cattttcggtgattactactgcagttggatatggttgggttgcatcttgtggctaataatatctactttttttttttaatgcaatctggtaaatacatta 38865084  T
Q  405 gtataatttaaggaatcacattcttatgacatttttgctttatttcctgtacaaatatttatcaatgaagattgaactagtcagtttattgtttgttcac 504  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38865085 gtataatttaagaaatcacattcttatgacatttttgctttatttcctgtacaaatatttatcaatgaagattgaactagtcagtttattgtttgttcac 38865184  T
Q  505 atttgctagtcaagtttcaaaattacagttaactatgttttgatagaccaactctttccactatttccgatctccattcaccaatttattaatgatctta 604  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |     
T  38865185 atttgctaggcaagtttcaaaattacagttaactatgttttgatagaccaactctttccactatttccaatctccattcaccaatttattaatgatcgt- 38865283  T
Q  605 aaaaacattgaaaagtgtatgaaaactt---------tctttattatttgtcatttatttaagttttctttgttcatctaattgtcttatttgaac 691  Q
    |||||||||||||| |||||||||||||         |||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  38865284 aaaaacattgaaaa-tgtatgaaaacttacactagaatctttattatttttcatttattt-agttttatttgttcatctaattgtcttatttgaac 38865377  T

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