View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2262-Insertion-6 (Length: 621)
Name: NF2262-Insertion-6
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262-Insertion-6 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 567; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 8 - 609
Target Start/End: Original strand, 11079773 - 11080375
Alignment:
| Q |
8 |
gccagaagggtctttggagaggacaaaggagaagggaatggttgttagaaactgggcaccacaaggttcaatactaagacatagctcagtaggtgggttc |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
11079773 |
gccagaagggtttttggagaggacaaaggagaagggaatggttgttagaaactgggcaccacaaggttcaatactaagacatagctcagttggtgggttc |
11079872 |
T |
|
| Q |
108 |
gtgactcattgtggatggaactccgtgttggaagctatttgcgaaggagttccaatgataacgtggccactttacgcggagcagaagatgaatagattga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11079873 |
gtgactcattgtggatggaactccgtgttggaagctatttgcgaaggagttccaatgataacgtggccactttacgcggagcagaagatgaatagattga |
11079972 |
T |
|
| Q |
208 |
ttttggtgcaagaatggaaagtggctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatgga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11079973 |
ttttggtgcaagaatggaaagtggctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatgga |
11080072 |
T |
|
| Q |
308 |
atcagaaaaagggaaagaggttagagagacaattttgaagatgaaaataagggctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaaa |
407 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11080073 |
atcagaaaaggggaaagaggttagagagacaattttgaagatgaaaataagtgctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaaa |
11080172 |
T |
|
| Q |
408 |
aagttaggagattcttggagggagcatgcttcctggactagtgtatctccaaattctccctttctttttgcttgagaaatttagagttagttatagaaaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11080173 |
aagttaggagattcttggagggagcatgcttcttggactagtgtatctccaaattccccctttctttttgcttgagaaatttagagttagttatagaaaa |
11080272 |
T |
|
| Q |
508 |
taagctt-aaaaaagtgtgaaattcaaaagtgaatttataagcacaaatttagtgtgtatttggttatgttgttgatgaaattgagtttgaatcaatgaa |
606 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11080273 |
taagcttgaaaaaagtgtgaaattcaaaagtgaatttataagcacaaatttagtgagtatttggttatgttgttgatgaaattgagtttgaatcaatgaa |
11080372 |
T |
|
| Q |
607 |
ttt |
609 |
Q |
| |
|
||| |
|
|
| T |
11080373 |
ttt |
11080375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 574
Target Start/End: Original strand, 11002632 - 11003198
Alignment:
| Q |
8 |
gccagaagggtctttggagaggacaaaggagaagggaatggttgttagaaactgggcaccacaaggttcaatactaagacatagctcagtaggtgggttc |
107 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||||||||| || ||||| ||||||||||||| | ||||| | || || ||||| ||||| ||| |
|
|
| T |
11002632 |
gccagaagggtttttggagaggacgaaggaaaagggaatggtggtgagaaattgggcaccacaagatgcaatattgagtcacgaatcagttggtggattc |
11002731 |
T |
|
| Q |
108 |
gtgactcattgtggatggaactccgtgttggaagctatttgcgaaggagttccaatgataacgtggccactttacgcggagcagaagatgaatagattga |
207 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||||| | ||||| | || || || || | | |||| | | ||| |
|
|
| T |
11002732 |
gtgactcactgtggatggaactcagtgttggaagctatttgtgaaggagtgcctatgattgcatggcctttgtatgcagaacaaaggttgaacaaaatga |
11002831 |
T |
|
| Q |
208 |
ttttggtgcaagaatggaaagtggctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatgga |
307 |
Q |
| |
|
||||||| | ||| ||| |||||||||||| | |||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
11002832 |
ttttggttgaggaaatgaaggtggctttggaactaaatgggtcaaaaaaagggtttgtgagtggaaatgagttgggggagagagttaaggagttgatgga |
11002931 |
T |
|
| Q |
308 |
atcagaaaaagggaaagaggttagagagacaattttgaagatgaaaataagggctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaaa |
407 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11002932 |
atcagaaaaagggaaagagattagagagacaattttgaagatgaaaacaagtgctaaggaggcaaaaggaggaggtggatcttctcttgttgatttgaaa |
11003031 |
T |
|
| Q |
408 |
aagttaggagattcttggagggagcatgcttcctggactagtgtatctccaaattctccctttctttttgcttgagaaatttagagttagttatagaaaa |
507 |
Q |
| |
|
| |||||||||||||||||||||||||||||| | ||||||| ||||||||||||| || || ||||||||||| |||| ||| |||||||||||||| |
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|
| T |
11003032 |
aggttaggagattcttggagggagcatgcttctttgactagtttatctccaaattccccattggtttttgcttgaaaaatagagaattagttatagaaaa |
11003131 |
T |
|
| Q |
508 |
taagcttaaaaaagtgtgaaattcaaaagtgaatttataagcacaaatttagtgtgtatttggttat |
574 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||| |||||||||||| ||||||| ||||| |
|
|
| T |
11003132 |
caagcttaaaaaagtgtaaaattcaaaagtgaatttctaaacacaaatttagtttgtattttgttat |
11003198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 9 - 463
Target Start/End: Original strand, 11019014 - 11019468
Alignment:
| Q |
9 |
ccagaagggtctttggagaggacaaaggagaagggaatggttgttagaaactgggcaccacaaggttcaatactaagacatagctcagtaggtgggttcg |
108 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||| ||||||| | | ||| | || |||| ||| || ||||| || | |
|
|
| T |
11019014 |
ccagaagggtttttggagaggacaaaggacaagggaatggttgtgagaaattgggccccacaagttgcgatattgagtcataactccgtgggtggatttg |
11019113 |
T |
|
| Q |
109 |
tgactcattgtggatggaactccgtgttggaagctatttgcgaaggagttccaatgataacgtggccactttacgcggagcagaagatgaatagattgat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| | ||||| | | ||| || || | | | ||||||||| | |
|
|
| T |
11019114 |
tgactcattgtggatggaactccgtgttggaagctatttgtgaaggggtgccaatgattgcatggcctttgttcgcagaacaaaggctaaatagattggt |
11019213 |
T |
|
| Q |
209 |
tttggtgcaagaatggaaagtggctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaa |
308 |
Q |
| |
|
||| || | ||| ||| ||||||||| || |||| | ||| || || |||||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
11019214 |
tttagtcgatgaaatgaaggtggctttgaaagtgaaccaatcagaaaataggtttgtgagtggcacagagttgggtgagagagttaaggagttgatggaa |
11019313 |
T |
|
| Q |
309 |
tcagaaaaagggaaagaggttagagagacaattttgaagatgaaaataagggctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaaaa |
408 |
Q |
| |
|
|| || || || || ||| ||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11019314 |
tcggaccgtggaaaggatattaaagagaggattttgaaaatgaaaataagtgctaaggaggcaagaggaggaggtggatcttctcttgttgatttgaaaa |
11019413 |
T |
|
| Q |
409 |
agttaggagattcttggagggagcatgcttcctggactagtgtatctccaaattc |
463 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||| |||| |||| |||||||| |
|
|
| T |
11019414 |
agttgggagattcatggagggagcatgcttcttggaatagtttatcaccaaattc |
11019468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 12 - 406
Target Start/End: Original strand, 10968456 - 10968850
Alignment:
| Q |
12 |
gaagggtctttggagaggacaaaggagaagggaatggttgttagaaactgggcaccacaaggttcaatactaagacatagctcagtaggtgggttcgtga |
111 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||||||| | ||||| ||||||||||||||| ||||| ||| ||| ||| | ||||| ||||||| |
|
|
| T |
10968456 |
gaagggtttttggagaggacaaagcaaaagggaatggtggcaagaaattgggcaccacaaggtgcaatattaaagcatgactcgattggtggattcgtga |
10968555 |
T |
|
| Q |
112 |
ctcattgtggatggaactccgtgttggaagctatttgcgaaggagttccaatgataacgtggccactttacgcggagcagaagatgaatagattgatttt |
211 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||| |||||||| || ||| | |||||||| | || || || || | | |||| | ||||||| |
|
|
| T |
10968556 |
cacattgtggatggaactcggtgttggaagctatttgtgaaggagtgcctatggtggcgtggccattatatgcagaacaaaggctgaacaaggtgatttt |
10968655 |
T |
|
| Q |
212 |
ggtgcaagaatggaaagtggctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaatca |
311 |
Q |
| |
|
||| | || ||| || ||||||||| |||| || |||||||| ||||||||||||| || ||||| ||||| || ||||||| || ||||| || |
|
|
| T |
10968656 |
ggttgacgagatgaaggttgctttggaactgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactcc |
10968755 |
T |
|
| Q |
312 |
gaaaaagggaaagaggttagagagacaattttgaagatgaaaataagggctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaa |
406 |
Q |
| |
|
|| |||||||||||| |||| | | ||||| |||||||||||||| ||||| || ||||||| || ||||||| ||| ||||||| |||||| |
|
|
| T |
10968756 |
gataaagggaaagagattaggaaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaa |
10968850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 10982406 - 10982806
Alignment:
| Q |
12 |
gaagggtctttggagaggacaaaggagaagggaatggttgttagaaactgggcaccacaaggttcaatactaagacatagctcagtaggtgggttcgtga |
111 |
Q |
| |
|
||||||| ||||||||||||||| || | ||||||||| || ||||| ||||||||||||||| ||||| ||| ||| ||| | ||||| ||||||| |
|
|
| T |
10982406 |
gaagggtttttggagaggacaaaagaaaggggaatggtggtaagaaattgggcaccacaaggtgcaatattaaagcatgactcgatcggtggattcgtga |
10982505 |
T |
|
| Q |
112 |
ctcattgtggatggaactccgtgttggaagctatttgcgaaggagttccaatgataacgtggccactttacgcggagcagaagatgaatagattgatttt |
211 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| | || |||||||| || ||| | | |||||| | || || || || | | |||| | ||||||| |
|
|
| T |
10982506 |
cacattgtggatggaactcggtgttggaagctgtatgtgaaggagtgcctatggtggcatggccattgtatgcagaacaaaggctgaacaaggtgatttt |
10982605 |
T |
|
| Q |
212 |
ggtgcaagaatggaaagtggctttggaattgaatgagtcaaaagatgggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaatca |
311 |
Q |
| |
|
||| | || ||| || |||||||||||||| || |||||||| ||||||||||||| || ||||| ||||| | ||||||| || ||||| || |
|
|
| T |
10982606 |
ggttgaggagatgaaggttgctttggaattgaaggattcaaaagacgggtttgtgagtggaaccgagttaggggatcaaattaaggaattaatggactcc |
10982705 |
T |
|
| Q |
312 |
gaaaaagggaaagaggttagagagacaattttgaagatgaaaataagggctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaaaaagt |
411 |
Q |
| |
|
|| || ||||||||| ||||| | | ||||| |||||||||||||| ||||| || ||||||| || ||||||| ||| ||||| | |||||| |||| |
|
|
| T |
10982706 |
gataaggggaaagagattagacaaattattttcaagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcccttgtcgctttgaataagt |
10982805 |
T |
|
| Q |
412 |
t |
412 |
Q |
| |
|
| |
|
|
| T |
10982806 |
t |
10982806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 11050229 - 11050287
Alignment:
| Q |
108 |
gtgactcattgtggatggaactccgtgttggaagctatttgcgaaggagttccaatgat |
166 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
11050229 |
gtgattcattgtggatggaactccgtgttggaagctatttatgaaggggtgccaatgat |
11050287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 23628149 - 23628117
Alignment:
| Q |
109 |
tgactcattgtggatggaactccgtgttggaag |
141 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
23628149 |
tgactcattgtggatggaactcggtgttggaag |
23628117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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