View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2262R-Insertion-3 (Length: 210)

Name: NF2262R-Insertion-3
Description: NF2262R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2262R-Insertion-3
NF2262R-Insertion-3
[»] chr6 (6 HSPs)
chr6 (9-210)||(11079576-11079777)
chr6 (53-198)||(11018828-11018973)
chr6 (9-202)||(11002443-11002636)
chr6 (16-169)||(10982246-10982399)
chr6 (16-170)||(10968295-10968449)
chr6 (100-204)||(18300086-18300190)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 11079777 - 11079576
Alignment:
Q  9 ctggcaacaactcatccaaacttagttcctccgactccatatcgctcctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11079777 ctggcaacaactcatccaaacttagttcctccgactccatatcgctcctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctg 11079678  T
Q  109 attaatttgagccttagaaaatctccctaagcttccaaagctcaacaacacgacgctttgacctggctgtgaatcgagccaactcaaacacccactttta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11079677 attaatttgagccttagaaaatctccctaagcttccaaagctcaacaaaacgacgctttgacctggctgtgaatcgagccaactcaaacacccactttta 11079578  T
Q  209 tc 210  Q
    ||    
T  11079577 tc 11079576  T

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Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 53 - 198
Target Start/End: Complemental strand, 11018973 - 11018828
Alignment:
Q  53 ctcctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctcattaatttgagccttagaaaatctccctaagcttccaaagctca 152  Q
    |||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||| | ||||||| |||||||||| || | ||||||||||||||    
T  11018973 ctcctaacaacccacaagaatctttgctcacttttctccaatccaatagctatctcattcaattgagccctagaaaatcttcccatgcttccaaagctca 11018874  T
Q  153 acaacacgacgctttgacctggctgtgaatcgagccaactcaaaca 198  Q
    |||||||||||||||||| ||| || || |||||||||||||||||    
T  11018873 acaacacgacgctttgacttggttgcgagtcgagccaactcaaaca 11018828  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 11002636 - 11002443
Alignment:
Q  9 ctggcaacaactcatccaaacttagttcctccgactccatatcgctcctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctc 108  Q
    |||||||||| ||||||||||| ||||||||| | |     |||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||||||    
T  11002636 ctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaatccataagaatctttgctcacttttctccaatccaatagctatctc 11002537  T
Q  109 attaatttgagccttagaaaatctccctaagcttccaaagctcaacaacacgacgctttgacctggctgtgaatcgagccaactcaaacaccca 202  Q
    ||| |  |||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||  || || || || |||||| |||||||||||    
T  11002536 attcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgacgctttgactaggttgcgagtcaagccaaatcaaacaccca 11002443  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 10982399 - 10982246
Alignment:
Q  16 caactcatccaaacttagttcctccgactccatatcgctcctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctcattaatt 115  Q
    |||||| ||||||||| | |||||  | ||||  |||||||||| || ||||||||||||||| |||||||||||||| ||||  ||||||||||| |      
T  10982399 caactcgtccaaactttgctcctctaaatccaactcgctcctaataacccacaagaatctttgctcacttttttccaatccaagtgctatctcattcaac 10982300  T
Q  116 tgagccttagaaaatctccctaagcttccaaagctcaacaacacgacgctttga 169  Q
    ||||||||||||||||| || | ||||||||| || ||||||||||||||||||    
T  10982299 tgagccttagaaaatcttcccatgcttccaaaacttaacaacacgacgctttga 10982246  T

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Target: chr6; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 10968449 - 10968295
Alignment:
Q  16 caactcatccaaacttagttcctccgactccatatcgctcctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctcattaatt 115  Q
    |||||| ||||||||| | |||||  | ||||  || |||||||||| ||||||||||||||| |||||| ||||||| ||||  ||||||||||| |      
T  10968449 caactcgtccaaactttgctcctctaagtccaactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgctatctcattcaac 10968350  T
Q  116 tgagccttagaaaatctccctaagcttccaaagctcaacaacacgacgctttgac 170  Q
    ||||||||||||||||| || | ||||||||| || |||||||||||||||||||    
T  10968349 tgagccttagaaaatcttcccatgcttccaaaacttaacaacacgacgctttgac 10968295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 18300086 - 18300190
Alignment:
Q  100 agctatctcattaatttgagccttagaaaatctccctaagcttccaaagctcaacaacacgacgctttgacctggctgtgaatcgagccaactcaaacac 199  Q
    ||||||||| || ||||||  |||  ||||||| ||  |||||||||||||||| ||||| || |||||||  || ||  | | ||||||||||||||||    
T  18300086 agctatctcttttatttgacgctttaaaaatcttccatagcttccaaagctcaaaaacacaacactttgactaggttgcaagttgagccaactcaaacac 18300185  T
Q  200 ccact 204  Q
    |||||    
T  18300186 ccact 18300190  T

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