View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2262_high_18 (Length: 238)
Name: NF2262_high_18
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 41834303 - 41834347
Alignment:
| Q |
18 |
tataacttatgagtcattttttatttcacggtgttattgttcccc |
62 |
Q |
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| T |
41834303 |
tataacttatgagtcattttttatttcacggtgttattgttcccc |
41834347 |
T |
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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 41834414 - 41834455
Alignment:
| Q |
126 |
gagagctaagctctcaaataaaaggtttcggcaacatcactt |
167 |
Q |
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| T |
41834414 |
gagagctaagctctcaaataaaaggtttcggcaacatcactt |
41834455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 41834501 - 41834563
Alignment:
| Q |
176 |
tagcatgattcgacaatgctccaagcctatttttgtnnnnnnnctgaataatgttcaaagagt |
238 |
Q |
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| T |
41834501 |
tagcatgattcgacaatgctccaagcctatttttgtaaaaaaactgaataatgtttaaagagt |
41834563 |
T |
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