View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2262_high_5 (Length: 378)
Name: NF2262_high_5
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 144 - 373
Target Start/End: Original strand, 47547742 - 47547972
Alignment:
| Q |
144 |
tcaagtgcaataaaccaaaagaaagaacaacttaacaatgcaatgcaacatggtgggagttgagtaagtcacacacaaagttaatttactggcttcctct |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47547742 |
tcaagtgcaataaaccaaaagaaagaacaacttaacaatgcaatgcaacatggtgggagttgagtaagtcacacacaaagttaatttactggcttcctct |
47547841 |
T |
|
| Q |
244 |
aatcttcaacgcttgatcaattaaaaagtcataattaaagggttaaa-gaaaaagcgtgcgagaaaaatattgcttgagaaagacattcgattctaatgg |
342 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47547842 |
aatcttcaacgcttgatcaattaaaaagttataattaaagggttaaaggaaaaggcgtgcgagaaaaatattgcttgagaaagacattcgattctaatgg |
47547941 |
T |
|
| Q |
343 |
ccgcaaaggtttaacaaaagttgatgatgtc |
373 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
47547942 |
ccgcaaaggtttaacaaaagttgataatgtc |
47547972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 185 - 373
Target Start/End: Original strand, 47542214 - 47542406
Alignment:
| Q |
185 |
aatgcaacatggtgggagttgagtaagtcacacacaaagttaatttactggcttcctctaatcttcaacgcttgatcaattaaaaagtcataattaaagg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
47542214 |
aatgcaacatggtgggagttgagtaagtcacacacaaagttaattaactggcttcatctaat----aacgcttgatcgattaaaaaaatataattaaagg |
47542309 |
T |
|
| Q |
285 |
gttaaagaaaaag-----cgtgcgagaaaaatattgct---tgagaaagacattcgattctaatggccgcaaaggtttaacaaaagttgatgatgtc |
373 |
Q |
| |
|
||||||| ||||| ||| |||||||| | |||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
47542310 |
gttaaaggaaaaggtacttgtgggagaaaaacaatgctttgtgagaaagacattcgattccaatggtcgcaagggtttaacaaaagttgataatgtc |
47542406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 47547618 - 47547667
Alignment:
| Q |
16 |
tctatcacccccacgctgggatcctttcctagataggctccgctgcaact |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47547618 |
tctatcacccccacgctgggatcctttcctggataggctccgctgcaact |
47547667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University