View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2262_low_11 (Length: 349)
Name: NF2262_low_11
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 7007513 - 7007192
Alignment:
| Q |
18 |
aagtacaaacaaagtagtaataaagggtggtgcaaatatcaaacttagtaggttgctggtgtgtgagcaatgaaactaatgcactgcacttgacgaacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7007513 |
aagtacaaacaaagtagtaataaagggtggtgcaaatatcaaacttagtaggttgctggtgtgtgagcaatgaaactaatgcactgcacttgacgaacat |
7007414 |
T |
|
| Q |
118 |
tgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaagctccttcaacacttgagaagaatcggtggctccgaacaaagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7007413 |
tgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaagctccttcaacacttgagaagaatcggtggctccgaacaaagg |
7007314 |
T |
|
| Q |
218 |
caacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttctatataacacaaaacaaattaaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7007313 |
caacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttctatataacacaaaacaaattaaca |
7007214 |
T |
|
| Q |
318 |
catcaaccctacaaacttcatc |
339 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7007213 |
catcaaccctacaaacttcatc |
7007192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 7010591 - 7010260
Alignment:
| Q |
18 |
aagtacaaacaaagtagtaataaagggtggtgcaaatatcaaacttagtaggttgctggtgtgtgagcaatgaaactaatgcactgcacttgacgaacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7010591 |
aagtacaaacaaagtagtaataaagggtggtgcatatatcaaacttagtaggttgctggtgtgtgagcaatgaaactaatgcactgcacttgacgaacat |
7010492 |
T |
|
| Q |
118 |
tgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaagctccttcaacacttgagaagaatcggtggctccgaacaaagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
7010491 |
tgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaagctccttcaacacttgagaagaatcagtggctccaaacaaagg |
7010392 |
T |
|
| Q |
218 |
caacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttctatataacacaa----------aa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
7010391 |
caacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttctataaaacacaacaattcaaacaa |
7010292 |
T |
|
| Q |
308 |
caaattaacacatcaaccctacaaacttcatc |
339 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| |
|
|
| T |
7010291 |
caaattaacacatcaaccgtacaaaattcatc |
7010260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 294
Target Start/End: Complemental strand, 1358791 - 1358572
Alignment:
| Q |
75 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
174 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
|
|
| T |
1358791 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1358692 |
T |
|
| Q |
175 |
gctccttcaacacttgagaagaatcggtggctccgaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctc |
274 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1358691 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctc |
1358592 |
T |
|
| Q |
275 |
acggtagacaaatcctttct |
294 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
1358591 |
acggtacacaaatcctttct |
1358572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 294
Target Start/End: Complemental strand, 1374343 - 1374124
Alignment:
| Q |
75 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
174 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
|
|
| T |
1374343 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1374244 |
T |
|
| Q |
175 |
gctccttcaacacttgagaagaatcggtggctccgaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctc |
274 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1374243 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctc |
1374144 |
T |
|
| Q |
275 |
acggtagacaaatcctttct |
294 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
1374143 |
acggtacacaaatcctttct |
1374124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 294
Target Start/End: Complemental strand, 1394890 - 1394671
Alignment:
| Q |
75 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
174 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
|
|
| T |
1394890 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaactttgtcgaatccgatgatacggacaaaggcattagggtaagcatcaacaacttcatcaa |
1394791 |
T |
|
| Q |
175 |
gctccttcaacacttgagaagaatcggtggctccgaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctc |
274 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1394790 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcatagtatcctggtgaactgtggttctc |
1394691 |
T |
|
| Q |
275 |
acggtagacaaatcctttct |
294 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
1394690 |
acggtacacaaatcctttct |
1394671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 75 - 294
Target Start/End: Complemental strand, 1350885 - 1350666
Alignment:
| Q |
75 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
174 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
|
|
| T |
1350885 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1350786 |
T |
|
| Q |
175 |
gctccttcaacacttgagaagaatcggtggctccgaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctc |
274 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1350785 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctc |
1350686 |
T |
|
| Q |
275 |
acggtagacaaatcctttct |
294 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
1350685 |
acggtacacaaatcctttct |
1350666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 75 - 294
Target Start/End: Complemental strand, 1384539 - 1384320
Alignment:
| Q |
75 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
174 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
|
|
| T |
1384539 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1384440 |
T |
|
| Q |
175 |
gctccttcaacacttgagaagaatcggtggctccgaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctc |
274 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1384439 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctc |
1384340 |
T |
|
| Q |
275 |
acggtagacaaatcctttct |
294 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
1384339 |
acggtacacaaatcctttct |
1384320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 75 - 294
Target Start/End: Complemental strand, 1390644 - 1390425
Alignment:
| Q |
75 |
ggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaagcagctttagcttcagcaa |
174 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| | || || | | ||||||||| | | ||||| ||| |
|
|
| T |
1390644 |
ggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatcaa |
1390545 |
T |
|
| Q |
175 |
gctccttcaacacttgagaagaatcggtggctccgaacaaaggcaacttccacattgtccagtaacgtccatcatagtatcctggtgaactgtggttctc |
274 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1390544 |
gctccttcaacacttgagaagcatcagttgctccaaacaaaggcaacttccacattgtccagtaacgtccgtcataatatcctggtgaactgtggttctc |
1390445 |
T |
|
| Q |
275 |
acggtagacaaatcctttct |
294 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
1390444 |
acggtacacaaatcctttct |
1390425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University