View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2262_low_13 (Length: 305)
Name: NF2262_low_13
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_low_13 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 41381598 - 41381872
Alignment:
| Q |
16 |
ataataaccgataacagcaacaggaaagtagcacaaagcaacaaccatgtaggcaaagataactcctttccacattggacccttagatggtttctcaggt |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41381598 |
ataataaccgataatagcaacaggaaagtagcacaaagcaacaaccatgtaggcaaagataactcctttccacattggacccttagatggtttctcaggt |
41381697 |
T |
|
| Q |
116 |
gtagatgggattgtagattgaatttccaacaccacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41381698 |
gtagatgggattgtagattgaatttccaacaccacattgtgtcctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctg |
41381797 |
T |
|
| Q |
216 |
cactagtcgtggctttgctagtatattctacatttgcttgtactcccttgtgtacactaccagcccaagcaattg |
290 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41381798 |
cactagtcgtggctttgctagtatattgtacatttgcttgtactcccttgtgtacactaccaacccaagcaattg |
41381872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 43854600 - 43854448
Alignment:
| Q |
26 |
ataacagcaacaggaaagtagcacaaagcaacaaccatgtaggcaaagataactcctttccacattggacccttagatggtttctcaggtgtagatggga |
125 |
Q |
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|||| ||||||||| || || |||||||| ||||| || || || || | ||||||| |||||||||||||||| ||||||||||| ||||| || |||| |
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| T |
43854600 |
ataagagcaacagggaaataacacaaagctacaacaatatatgctaataaaactcctctccacattggacccttggatggtttctctggtgtggaaggga |
43854501 |
T |
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| Q |
126 |
ttgtagattgaatttccaacaccacattgtgacctgcataggcaaaagcaaca |
178 |
Q |
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|||| | |||||| ||||||||||||||||| || ||||||||||| |||||| |
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| T |
43854500 |
ttgttgcttgaatctccaacaccacattgtgtccagcataggcaaatgcaaca |
43854448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 7971163 - 7971435
Alignment:
| Q |
18 |
aataaccgataacagcaacaggaaagtagcacaaagcaacaaccatgtaggcaaagataactcctttccacattggacccttagatggtttctcaggtgt |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7971163 |
aataaccgataagagcaacaggaaagtagcacaaagcaacaacaatgtatgcaacaataactcctttccacattggacccttagatggtttctcaggtgt |
7971262 |
T |
|
| Q |
118 |
agatgggattgtagattgaatttccaacaccacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgca |
217 |
Q |
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||| || ||||| | ||| || |||| |||||| ||||| || ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7971263 |
agacggaattgttgcttggatctccagcaccacgttgtgtccggcaaaggcaaatgcaacagagccaagtgcattaaagaaattaaagacagatcctgca |
7971362 |
T |
|
| Q |
218 |
ctagtcgtggctttgctagtatattctacatttgcttgtactcccttgtgtacactaccagcccaagcaattg |
290 |
Q |
| |
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|||| || ||||||||| |||||| ||||||| || ||||||||||||||| |||||||||||||||||||| |
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| T |
7971363 |
gtagttgtagctttgctactatattgtacattttctagtactcccttgtgtatactaccagcccaagcaattg |
7971435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 8042550 - 8042278
Alignment:
| Q |
18 |
aataaccgataacagcaacaggaaagtagcacaaagcaacaaccatgtaggcaaagataactcctttccacattggacccttagatggtttctcaggtgt |
117 |
Q |
| |
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|||||||||||| ||||||||| ||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8042550 |
aataaccgataatagcaacagggaagtagcacaaagcaacaataatgtaggcaacaacaactcctttccacattggacccttagatggtttctccggtgt |
8042451 |
T |
|
| Q |
118 |
agatgggattgtagattgaatttccaacaccacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgca |
217 |
Q |
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||| || ||||| | ||| || |||| ||||||| |||| || ||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
8042450 |
agacggaattgttgcttggatctccagcaccacaatgtgtccagcaaaggcaaatgcaacagagccaagtgcattaaagaaataaaagacagatcctgca |
8042351 |
T |
|
| Q |
218 |
ctagtcgtggctttgctagtatattctacatttgcttgtactcccttgtgtacactaccagcccaagcaattg |
290 |
Q |
| |
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|||| || ||||||||| |||||| ||||||| || ||||||||||||||| |||||||||||||||||||| |
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| T |
8042350 |
gtagttgtagctttgctactatattgtacattttctagtactcccttgtgtatactaccagcccaagcaattg |
8042278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 8032646 - 8032374
Alignment:
| Q |
18 |
aataaccgataacagcaacaggaaagtagcacaaagcaacaaccatgtaggcaaagataactcctttccacattggacccttagatggtttctcaggtgt |
117 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||| |||||||||| | ||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
8032646 |
aataaccaataatagcaacaggaaagtagcacaaagcaacaacaatgtaggcaacaacaacacctctccacattggacccttagatggtttctcaggtgt |
8032547 |
T |
|
| Q |
118 |
agatgggattgtagattgaatttccaacaccacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgca |
217 |
Q |
| |
|
|||||| ||||| | ||| || || | ||||||||| || || ||||||||||| |||||||| || ||||||||||||||||||||||| ||| ||||| |
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| T |
8032546 |
agatggaattgttgcttggatctcgagcaccacattatgtccagcataggcaaatgcaacagagccgagtgcattaaagaaattaaagactgattctgca |
8032447 |
T |
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| Q |
218 |
ctagtcgtggctttgctagtatattctacatttgcttgtactcccttgtgtacactaccagcccaagcaattg |
290 |
Q |
| |
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|| | || || |||||| |||||| ||||||| ||||||||||||||||||||||| || ||||||||||| |
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| T |
8032446 |
gtatttgtagccttgctactatattgtacattttcttgtactcccttgtgtacactagtagtccaagcaattg |
8032374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 7978098 - 7978294
Alignment:
| Q |
20 |
taaccgataacagcaacaggaaagtagcacaaagcaacaaccatgtaggcaaagataactcctttccacattggacccttagatggtttctcaggtgtag |
119 |
Q |
| |
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||||| |||| ||||||||| ||||| |||||||||||||| ||||| |||| | ||||||| ||||||||||| |||| ||||||||||| ||||| | |
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| T |
7978098 |
taaccaataagagcaacagggaagtaacacaaagcaacaacaatgtatgcaacaacaactcctctccacattggaaccttggatggtttctccggtgtcg |
7978197 |
T |
|
| Q |
120 |
atgggattgtagattgaatttccaacaccacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgc |
216 |
Q |
| |
|
| || ||||| | ||| || || |||||||||||||| || |||||||||||||||| || ||||||||||||||||| | |||||| | |||||| |
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| T |
7978198 |
acggaattgttgcttggatctctaacaccacattgtgtccagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgc |
7978294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 2461 - 2711
Alignment:
| Q |
18 |
aataaccgataacagcaacaggaaagtagcacaaagcaacaaccatgtaggcaaagataactcctttccacattggacccttagatggtttctcaggtgt |
117 |
Q |
| |
|
||||||| || | |||||||||||||||||||| ||||||||| |||||||||| | ||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
2461 |
aataaccaattatagcaacaggaaagtagcacacagcaacaacaatgtaggcaacaacaacacctctccacattggacccttagatggtttctcaggtgt |
2560 |
T |
|
| Q |
118 |
agatgggattgtagattgaatttccaacaccacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgca |
217 |
Q |
| |
|
||| || ||||| | ||| || |||| ||||||||||| || ||||||||||| || | ||| |||||||||||||||||||||||||| ||| |||| |
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| T |
2561 |
agacggaattgttgcttggatctccagtaccacattgtgtccggcataggcaaacgcgatagagccaagtgcattaaagaaattaaagactgattctgcg |
2660 |
T |
|
| Q |
218 |
ctagtcgtggctttgctagtatattctacatttgcttgtactcccttgtgt |
268 |
Q |
| |
|
||||| || || ||| |||||| ||||||| || ||||||||||||| |
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|
| T |
2661 |
gccgtcgtagcgtttctactatattgtacattttctattactcccttgtgt |
2711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 14198047 - 14198261
Alignment:
| Q |
18 |
aataaccgataacagcaacaggaaagtagcacaaagcaacaaccatgtaggcaaagataactcctttccacattggacccttagatggtttctcaggtgt |
117 |
Q |
| |
|
||||||| || | |||||| ||||||||||||||||| ||||| || ||||| | || |||||| ||||||||||||||||||||||||| || ||||| |
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| T |
14198047 |
aataaccaatgagagcaactggaaagtagcacaaagctacaactatataggctacaatcactcctctccacattggacccttagatggtttttccggtgt |
14198146 |
T |
|
| Q |
118 |
agatgggattgtagattgaatttccaacaccacattgtgacctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgca |
217 |
Q |
| |
|
|||||| ||||| | ||| ||||| |||||||| ||||| || ||||| |||||||| ||| ||||| ||||| |||||| |||||||| ||||| |
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| T |
14198147 |
agatggaattgttgcttggatttctaacaccacgttgtgtccggcataagcaaaagccacatctccaagggcattgaagaaaccaaagacagttcctggg |
14198246 |
T |
|
| Q |
218 |
ctagtcgtggctttg |
232 |
Q |
| |
|
||||||| |||||| |
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| T |
14198247 |
gtagtcgtagctttg |
14198261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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