View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2262_low_16 (Length: 268)
Name: NF2262_low_16
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 9113787 - 9113877
Alignment:
| Q |
24 |
gacctcgtggtaacttaaatttttctttccaccaagccaagaaagaaaccttataaacttaaaatgtcacatatatataaacaacaatact |
114 |
Q |
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| T |
9113787 |
gacctcgtggtaacttaaatttttctttccaccaagccaagaaagaaaccttataaacttaaaatgtcacatatatataaacaacaatact |
9113877 |
T |
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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 9113940 - 9114001
Alignment:
| Q |
187 |
tatgccaaattttaatggtaacaataaccatggtaacactatctgcatccaatgaatccttt |
248 |
Q |
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| T |
9113940 |
tatgccaaattttaatggtaacaataaccatggtaacactatctgcatccaatgaatccttt |
9114001 |
T |
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