View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2262_low_2 (Length: 542)

Name: NF2262_low_2
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2262_low_2
NF2262_low_2
[»] chr2 (7 HSPs)
chr2 (247-535)||(13447972-13448260)
chr2 (19-188)||(13447745-13447913)
chr2 (254-535)||(13454468-13454731)
chr2 (357-535)||(13439919-13440097)
chr2 (249-357)||(13439829-13439937)
chr2 (104-187)||(13454315-13454399)
chr2 (19-80)||(13454187-13454249)
[»] chr5 (2 HSPs)
chr5 (358-535)||(28385054-28385231)
chr5 (366-533)||(12540413-12540580)
[»] chr4 (5 HSPs)
chr4 (359-528)||(48965050-48965219)
chr4 (358-532)||(48967178-48967352)
chr4 (358-522)||(48961011-48961175)
chr4 (370-529)||(48957876-48958035)
chr4 (416-503)||(48912659-48912746)
[»] chr8 (1 HSPs)
chr8 (357-527)||(12641771-12641941)
[»] chr7 (1 HSPs)
chr7 (369-535)||(3417809-3417975)
[»] chr6 (1 HSPs)
chr6 (392-531)||(12590455-12590594)
[»] scaffold0536 (2 HSPs)
scaffold0536 (476-528)||(6800-6852)
scaffold0536 (479-531)||(1739-1791)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 247 - 535
Target Start/End: Original strand, 13447972 - 13448260
Alignment:
Q  247 cattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctc 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447972 cattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctc 13448071  T
Q  347 aatcttttaaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctc 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13448072 aatcttttaaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagccaccttcttgaatagcttgtatagctttttctc 13448171  T
Q  447 caaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 535  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448172 caaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 13448260  T

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Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 13447745 - 13447913
Alignment:
Q  19 gaaaaattaaaataaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaaattgaatcaaaacaattaagtttaaactattcgaaaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  13447745 gaaaaattaaaataaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaaattgaatcaaaacaattaagga-aaactattcgaaaat 13447843  T
Q  119 tcatgttaaatctgccagagtagctaaatgttacttcattgatttgagagtacttgtggcaggtattgtg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447844 tcatgttaaatctgccagagtagctaaatgttacttcattgatttgagagtacttgtggcaggtattgtg 13447913  T

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Target: chr2; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 254 - 535
Target Start/End: Original strand, 13454468 - 13454731
Alignment:
Q  254 acttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaatcttt 353  Q
    ||||| |||||||||||| || |||||||||| |||||||||||||| ||| ||||| ||| |||||||||||||| | ||||||||| |||||||||      
T  13454468 acttctgcttgacgaaacaacaatgttattagaaaaagttgaaaaaacttacacaatgctcctttgaattaatcatgcggcttgaggtttctcaatct-- 13454565  T
Q  354 taaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactc 453  Q
                    ||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |||| ||||||||||||||    
T  13454566 ----------------tttaagttcatcaatcaaagccaacaaattattataagatgagccacctttttgaatagcttgtgtagccttttctccaaactc 13454649  T
Q  454 tcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 535  Q
    ||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  13454650 tcgagcacgtaccctgatatttttagcttcatcaccaccgcccatcaatctcctcacagccttctctatgctatctttgctc 13454731  T

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Target: chr2; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 357 - 535
Target Start/End: Original strand, 13439919 - 13440097
Alignment:
Q  357 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 456  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |    
T  13439919 ggtctctcaatcttttaagttcttcaattaaagccaacaaattattataagacgagccaccttcttgaatagcttgtgtagccttttctccaaactcttg 13440018  T
Q  457 agcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 535  Q
    |||| ||||||| ||||||| |||||||||||||   |||||||||||||| ||||||||||||||| |||| ||||||    
T  13440019 agcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacagccttctctatgttatccctgctc 13440097  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 13439829 - 13439937
Alignment:
Q  249 ttcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaa 348  Q
    |||||||||| |||||||||| | || || ||||||||| | ||||||||||  ||||||||| || ||||||||||||||   ||||| ||||||||||    
T  13439829 ttcacacttctgcttgacgaaccaacaatattattaggataggttgaaaaaacatagacaatagtcctttgaattaatcatgtcgcttggggtctctcaa 13439928  T
Q  349 tcttttaag 357  Q
    |||||||||    
T  13439929 tcttttaag 13439937  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 13454315 - 13454399
Alignment:
Q  104 aaactattcgaaaattcatgttaaatctgccagagtagctaaat-gttacttcattgatttgagagtacttgtggcaggtattgt 187  Q
    ||||||||| ||||||||| ||||||||||||  ||||||| || ||| |||||||||||||||||||||||| |||| ||||||    
T  13454315 aaactattcaaaaattcatattaaatctgccatggtagctatattgttgcttcattgatttgagagtacttgtcgcagatattgt 13454399  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 13454187 - 13454249
Alignment:
Q  19 gaaaaatt-aaaataaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaa 80  Q
    |||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||| |||||    
T  13454187 gaaaaattgaaaataaatgcgaaaacacattaagaagttagaagaaccacgtacacaacaaaa 13454249  T

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Target: chr5 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 358 - 535
Target Start/End: Original strand, 28385054 - 28385231
Alignment:
Q  358 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 457  Q
    ||||||| |||||||||||||||| || ||||| ||||||||||||||||| || || ||||||| || |||| || |||| || ||||| |||||||||    
T  28385054 gtctctcaatcttttaagttcgtcgattaaagctaacaaattattataagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcga 28385153  T
Q  458 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 535  Q
    ||| || | || ||||||||||||||||| ||||||||||||||| |||| | ||||||||||||| |||||||||||    
T  28385154 gcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctcatagccttctctatgttatctctgctc 28385231  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 366 - 533
Target Start/End: Original strand, 12540413 - 12540580
Alignment:
Q  366 atcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtag 465  Q
    ||||||||| |||||| |||||||  ||||||||||||| ||| || || |||||||||| |||| || |||| || ||||||| |||||| ||| ||||    
T  12540413 atcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtag 12540512  T
Q  466 cctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgc 533  Q
     || |||||||||||||||| |||||| |||||||||||||| | |||||||||||||| ||||||||    
T  12540513 tctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgc 12540580  T

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Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 359 - 528
Target Start/End: Original strand, 48965050 - 48965219
Alignment:
Q  359 tctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgag 458  Q
    |||||| ||||||| || || |||||||| || |||||||| |||| ||||||||| ||||||||||| ||| || |||| ||||||||||||||| |||    
T  48965050 tctctcaatcttttgagatcatcaatcaaggctaacaaattcttatgagacgagccaccttcttgaatggctcgtctagccttttctccaaactcttgag 48965149  T
Q  459 catgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatc 528  Q
    || |    || || || |||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  48965150 cacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatc 48965219  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 358 - 532
Target Start/End: Original strand, 48967178 - 48967352
Alignment:
Q  358 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 457  Q
    |||||||  ||||||||| || ||||||||||| |  ||||||||||||||| |||| ||||||||||  ||| || |||| ||||||||||| ||||||    
T  48967178 gtctctcattcttttaagatcatcaatcaaagcaagtaaattattataagacaagccaccttcttgaagtgctcgtgtagccttttctccaaagtctcga 48967277  T
Q  458 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctg 532  Q
    ||| || | ||||| || |||||||||||  ||  |||||||||||| |||| ||| ||||||||| ||||||||    
T  48967278 gcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatcttcttatagctttctctatgttatctctg 48967352  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 358 - 522
Target Start/End: Original strand, 48961011 - 48961175
Alignment:
Q  358 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 457  Q
    ||||||| |||||||||| || ||||| ||||||||||||||||||| ||| ||||| ||| |||||| ||||  |||||| || || ||||||||||||    
T  48961011 gtctctcaatcttttaagatcatcaattaaagccaacaaattattatgagatgagccgcctacttgaacagctcatatagccttatccccaaactctcga 48961110  T
Q  458 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctat 522  Q
    ||| |  | || |||| ||| |||||||||||||||||||| ||| | || || |||||||||||    
T  48961111 gcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctat 48961175  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 370 - 529
Target Start/End: Original strand, 48957876 - 48958035
Alignment:
Q  370 tttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctg 469  Q
    |||||| || |||||||||| ||||||||| |||| ||| || || |||||||||| |||| || |||| |||||||| |||||| ||||| |  |  ||    
T  48957876 tttaagatcatcaatcaaagacaacaaattgttatgagatgatccaccttcttgaacagctcgtgtagccttttctccgaactcttgagcacgctgtttg 48957975  T
Q  470 atattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatct 529  Q
    || |  |||||||||||||||||||||||||||||| | |||||||| ||||| ||||||    
T  48957976 atttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctatactatct 48958035  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 416 - 503
Target Start/End: Complemental strand, 48912746 - 48912659
Alignment:
Q  416 ccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatc 503  Q
    ||||||| ||| || ||| ||||||| || |||||||||||||||||| | ||||| || |||||||||||||||| |||||||||||    
T  48912746 ccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 48912659  T

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Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 357 - 527
Target Start/End: Complemental strand, 12641941 - 12641771
Alignment:
Q  357 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 456  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||| |||||| || ||||||| || ||| ||| |||| ||||  ||||||||| |    
T  12641941 ggtctctcgatcttttaagatcgttaatcaaagccaacaaattgttatgagacgacccgccttcttcaacagcatgtgtagcctttttcccaaactcttg 12641842  T
Q  457 agcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctat 527  Q
    |||| || | ||||| |  | ||||||||||||| |||||||||||||||| ||||| |||||||| ||||    
T  12641841 agcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctatactat 12641771  T

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Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 369 - 535
Target Start/End: Complemental strand, 3417975 - 3417809
Alignment:
Q  369 ttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcct 468  Q
    ||||||||||||| |||||||  |||||||||| ||  || || || ||||||||||||||| || |||| || ||||||| |||||||||| |||| ||    
T  3417975 ttttaagttcgtcgatcaaagttaacaaattatgatgtgaggaaccaccttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtct 3417876  T
Q  469 gatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 535  Q
     |||  |||||| ||||||| || ||||||||||||||| |  ||||||||||||  ||||||||||    
T  3417875 cataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgtcatctctgctc 3417809  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 531
Target Start/End: Complemental strand, 12590594 - 12590455
Alignment:
Q  392 aacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccac 491  Q
    ||||||||||||| ||| ||||| |||| ||||| |||| || |||||||||| || |||||| ||  | || | ||||| |  |||||||||   ||||    
T  12590594 aacaaattattattagaggagccaccttgttgaacagctagtctagctttttcccctaactcttgactacgtcgtctgatttcctcagcttcaatgccac 12590495  T
Q  492 cgtccatcaatctccttacagccttctctatgctatctct 531  Q
    | ||||||||||| || ||||| |||| ||||||||||||    
T  12590494 catccatcaatcttctcacagcattctttatgctatctct 12590455  T

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Target: scaffold0536 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 6852 - 6800
Alignment:
Q  476 tcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatc 528  Q
    |||||||| |||||||| |||||||||||||| ||||||||||| || |||||    
T  6852 tcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatc 6800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 531
Target Start/End: Complemental strand, 1791 - 1739
Alignment:
Q  479 gcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctct 531  Q
    ||||||||||||| ||||||||| ||||||| |||||||| ||| | ||||||    
T  1791 gcttcatcaccactgtccatcaacctccttaaagccttctttatacgatctct 1739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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