View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2262_low_20 (Length: 248)
Name: NF2262_low_20
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 24863656 - 24863853
Alignment:
| Q |
43 |
atgaaattcccaatccttactattacaccaccaaaacaattcctcatcaaaccgaagcaagaaatccctttatccctatcttcaagaactttgatactta |
142 |
Q |
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| T |
24863656 |
atgaaattcccaatccttactattacaccaccaaaacaattcctcatcaaaccgaagcaagaaatccctttatccctatcttcaagaactttgatactta |
24863755 |
T |
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| Q |
143 |
cacctgcagcttggagacttaaagcacagctattcagctttagcttctcaatggcagtagtatccgtaatgccaagtacaagattgtccgttcatctc |
240 |
Q |
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| T |
24863756 |
cacctgcagcttggagacttaaagcacatcgattcagctttagcttctcaatggcagtagtatccgtaatgccaagtacaagattgtccattcttctc |
24863853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 24834833 - 24834946
Alignment:
| Q |
57 |
ccttactattacaccaccaaaacaattcctcatcaaaccgaagcaagaaatccctttatccctatcttcaagaactttgatacttacacctgcagcttgg |
156 |
Q |
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| T |
24834833 |
ccttacgagtacaccacgaaaataattcctcatcaaatcgaagcaagaaatcgcttcatctctatcttcaagaactttgaaacttacccctgcagcctgg |
24834932 |
T |
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| Q |
157 |
agacttaaagcaca |
170 |
Q |
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| T |
24834933 |
agactcaaagcaca |
24834946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 38612848 - 38612934
Alignment:
| Q |
57 |
ccttactattacaccaccaaaacaattcctcatcaaaccgaagcaagaaatccctttatccctatcttcaagaactttgatacttac |
143 |
Q |
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|||||| | |||||||| |||| |||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||| |||||| |
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| T |
38612848 |
ccttacgagtacaccacgaaaataattcctcatcaaatcgaagcaagaaatcgcttcatctctatcttcaagaactttgaaacttac |
38612934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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