View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2262_low_21 (Length: 247)
Name: NF2262_low_21
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 10095078 - 10094918
Alignment:
| Q |
71 |
agtattttcttgaagcacttccatatatacttcatataacagctccccatctttttgtgaaaagcttattgttccatttccccgttgagaaactttgggt |
170 |
Q |
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| T |
10095078 |
agtattttcttgaagcacttccatatatacttcatataacagctccccatctttttgtgaaaagcttattgttccatttccccgttgagaaactttgggt |
10094979 |
T |
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| Q |
171 |
gcatgggaatattaagggaggaaagcttgcttcaatttgttccatgtttctatgaatttgg |
231 |
Q |
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| T |
10094978 |
gcatgggaatattaagggaggaaagcttgcttcaatttgttccatgtttctatgaatttgg |
10094918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 10034714 - 10034552
Alignment:
| Q |
71 |
agtattttcttgaagcacttccatatatacttcatataacagctccccatctttttgtgaaaagcttattgttccatttccccgttgagaaactttgggt |
170 |
Q |
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| T |
10034714 |
agtattttcttgaagcacttccatatatacttcatataacagctccccatctttttgtgaaaagcttattgttccatttccccgttgagaaactttgggt |
10034615 |
T |
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| Q |
171 |
gcatgggaatattaagggaggaaagcttgcttcaatttgttcc--atgtttctatgaatttgg |
231 |
Q |
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| T |
10034614 |
gcatgggaatattaagggaggaaagcttgcttcaatttgttccatatgtttctatgaatttgg |
10034552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10034810 - 10034740
Alignment:
| Q |
1 |
aaaatatctagcgtcttcttcgtggggtgaatcaatcctttgcataaggcagggatgattatccccttcta |
71 |
Q |
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| T |
10034810 |
aaaatatctagcgtcttcttcgtggggtgaatcaatcctttgcataaggcagggatgattatccccttcta |
10034740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10095174 - 10095104
Alignment:
| Q |
1 |
aaaatatctagcgtcttcttcgtggggtgaatcaatcctttgcataaggcagggatgattatccccttcta |
71 |
Q |
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| T |
10095174 |
aaaatatctagcgtcttcttcgtggggtgaatcaatcctttgcataaggcagggatgattatccccttcta |
10095104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 23667393 - 23667478
Alignment:
| Q |
122 |
tttttgtgaaaagcttattgttccatttccccgttgagaaactttgggtgcatgggaatattaagggaggaaagcttgcttcaatt |
207 |
Q |
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| T |
23667393 |
tttttgtgaaaaacttattgtttcattccccgaatgagaaactttggatgcatgggaatattgagggaggaaagattgcttcaatt |
23667478 |
T |
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