View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2262_low_22 (Length: 239)
Name: NF2262_low_22
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 36876721 - 36876570
Alignment:
| Q |
72 |
ttctcaaaaagactactatatcatcaaccttgacctctctcacatgttccaacatcgtctctctataccatactgacatatccttcattgctcattcttt |
171 |
Q |
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| T |
36876721 |
ttctcaaaaacaccactatatcgtcaaccttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattcttt |
36876622 |
T |
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| Q |
172 |
tccttacctccaacaactggatatcagtttccccaaaacaataaccggtaat |
223 |
Q |
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| T |
36876621 |
tcctttcctccaacaactggatatcagtttccccaaaacaataaccggtaat |
36876570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 33397687 - 33397498
Alignment:
| Q |
14 |
ctcacatctctcaacctctcctatcaccccaccttccctacattagggctactaactcttctcaaaaagactactatatcatcaaccttgacctctctca |
113 |
Q |
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| T |
33397687 |
ctcacatctctcaacctctcaaaccaccccactttccccacgttaggattgcaaactattctcaaaaacactaa------atcaaccttgacctctctca |
33397594 |
T |
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| Q |
114 |
catgttccaacatcgtctctctataccatactgacatatccttcattgctcattcttttccttacctccaacaactggatatcagtttccccaaaa |
209 |
Q |
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| T |
33397593 |
cttgttccaacatcggctctctataccatactgacatatccttcattgccgattccttccctttcctccaacaattggatatcagttaccctaaaa |
33397498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 27004671 - 27004880
Alignment:
| Q |
14 |
ctcacatctctcaacctctcctatcaccccaccttccctacattagggctactaactcttctcaaaaagactactatatcatcaaccttgacctctctca |
113 |
Q |
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| T |
27004671 |
ctcacatccctcaacctctccaaccacaccaccttccccgtcttagggttgcaaactcttctcaaaaagactactactaaatccaccttgacctctctca |
27004770 |
T |
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| Q |
114 |
catgttccaacatcgtctctctataccatactgacatatccttcattgctcattcttttccttacctccaacaactggatatcagtttccccaaaacaat |
213 |
Q |
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| T |
27004771 |
catgttccaatatggcttctctatgccacactcacatatccttgatcgcagattcattccccttcctccaacaattggatatcagtttccctaaaacaat |
27004870 |
T |
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| Q |
214 |
aaccggtaat |
223 |
Q |
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| T |
27004871 |
atctggtaat |
27004880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 37579729 - 37579839
Alignment:
| Q |
10 |
ttccctcacatctctcaacctctcctatcaccccaccttccctacattagggctactaactcttctcaaaaagactactatatcatcaaccttgacctct |
109 |
Q |
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| T |
37579729 |
ttccatcacttctctcaacctctccaaccaccccaccttccccgtattagggttgcagactattctcaaaaacaccactatatcatcaaccttgacctct |
37579828 |
T |
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| Q |
110 |
ctcacatgttc |
120 |
Q |
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|| || ||||| |
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| T |
37579829 |
ctgacttgttc |
37579839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 33707911 - 33707958
Alignment:
| Q |
4 |
ttctgtttccctcacatctctcaacctctcctatcaccccaccttccc |
51 |
Q |
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| T |
33707911 |
ttctgtttccctcacttccctcaacctctccaaccaccccaccttccc |
33707958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 33713748 - 33713822
Alignment:
| Q |
7 |
tgtttccctcacatctctcaacctctcctatcaccccaccttccctacattagggctactaactcttctcaaaaa |
81 |
Q |
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| T |
33713748 |
tgtttccctcacttccctcaacctctccaaccaccccaccttccctgagttagggttgcgagctcttctcaaaaa |
33713822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 1755578 - 1755546
Alignment:
| Q |
96 |
caaccttgacctctctcacatgttccaacatcg |
128 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
1755578 |
caactttgacctctctcacatgttccaacatcg |
1755546 |
T |
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