View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2262_low_24 (Length: 232)
Name: NF2262_low_24
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_low_24 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 42875421 - 42875652
Alignment:
| Q |
1 |
cagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtctttcttgcatgtgaagtcaggggctgatcccattccaaccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42875421 |
cagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtctttcttacatgtgaagtcaggggctgatcccattccaaccac |
42875520 |
T |
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| Q |
101 |
tggcatcttcaattgactagatgtgtttgtaagaaactttgttgggatttcaacactgcccatgttgttatttttgggttggactaaggttcaatgttaa |
200 |
Q |
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| T |
42875521 |
tggcatcttcaattgactagatgtgtttgtaagaacctttgttgggatttcaacactgcccatgttgttatttttgggttggactaaggttcaatgttaa |
42875620 |
T |
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| Q |
201 |
gattgttacactatgagagttatgtttgatga |
232 |
Q |
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| T |
42875621 |
gattggtacactatgagagttatgtttgatga |
42875652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 42889880 - 42889649
Alignment:
| Q |
1 |
cagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtctttcttgcatgtgaagtcaggggctgatcccattccaaccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42889880 |
cagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtctttcttacatgtgaagtcaggggctgatcccattccaaccac |
42889781 |
T |
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| Q |
101 |
tggcatcttcaattgactagatgtgtttgtaagaaactttgttgggatttcaacactgcccatgttgttatttttgggttggactaaggttcaatgttaa |
200 |
Q |
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| T |
42889780 |
tggcatcttcaattgactagatgtgtttgtaagaacctttgttgggatttcaacactgcccatgttgttatttttgggttggactaaggttcaatgttaa |
42889681 |
T |
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| Q |
201 |
gattgttacactatgagagttatgtttgatga |
232 |
Q |
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| T |
42889680 |
gattggtacactatgagagttatgtttgatga |
42889649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 42884552 - 42884768
Alignment:
| Q |
1 |
cagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtctttcttgcatgtgaagtcaggggctgatcccattccaaccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42884552 |
cagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtctttcttacatgtgaagtcaggggctgatcccattccaaccac |
42884651 |
T |
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| Q |
101 |
tggcatcttcaattgactagatgtgtttgtaagaaactttgttgggatttcaacactgcccatgttgttatttttgggttggactaaggttcaatgttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884652 |
tggcatcttcaattgactagatgtgtttgtaagaacctttgttgggatttcaacactgcccatgttgttatttttgggttggactaaggttcaatgttaa |
42884751 |
T |
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| Q |
201 |
gattgttacactatgag |
217 |
Q |
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|||||||||||| |||| |
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| T |
42884752 |
gattgttacactttgag |
42884768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 37505612 - 37505662
Alignment:
| Q |
5 |
atcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgt |
55 |
Q |
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|||||| |||||||||||||||||||||||||||| || ||||||||||| |
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| T |
37505612 |
atcaaaatgtctataaccttgtttgatggcttcaaggacagcatcttttgt |
37505662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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