View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2262_low_26 (Length: 205)
Name: NF2262_low_26
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_low_26 |
 | |
|
| [»] scaffold0329 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0329 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 11982 - 12147
Alignment:
| Q |
21 |
gagccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttg |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
11982 |
gagccaaaatcatatgctgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaaaactggtacctggcaacttg |
12081 |
T |
|
| Q |
121 |
ttgatttaccatccaatatcaaacccattggatgtagatggttttatcaagttaaatatcatgctg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
12082 |
ttgatttaccatccaatatcaaacccattggatgtagatggatttataaagttaaatatcatgctg |
12147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 52778653 - 52778818
Alignment:
| Q |
21 |
gagccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttg |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
52778653 |
gagccaaaatcatatgctgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaaaactggtacctggcaacttg |
52778752 |
T |
|
| Q |
121 |
ttgatttaccatccaatatcaaacccattggatgtagatggttttatcaagttaaatatcatgctg |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
52778753 |
ttgatttaccatccaatatcaaacccattggatgtagatggatttataaagttaaatatcatgctg |
52778818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 2360536 - 2360681
Alignment:
| Q |
21 |
gagccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttg |
120 |
Q |
| |
|
||||| ||||| ||||| |||||||| || ||||| |||||||| || || |||||||||||||| |||||||||||||| | |||||| ||| |||||| |
|
|
| T |
2360536 |
gagcctaaatcctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttg |
2360635 |
T |
|
| Q |
121 |
ttgatttaccatccaatatcaaacccattggatgtagatggtttta |
166 |
Q |
| |
|
| ||||||||| | ||| | || || ||||||||||||||| |||| |
|
|
| T |
2360636 |
tggatttaccaccaaatgttaagcctattggatgtagatggattta |
2360681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 12286273 - 12286435
Alignment:
| Q |
21 |
gagccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttg |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
12286273 |
gagccaaaatcatatgctgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaaaactggtacctggcaacttg |
12286372 |
T |
|
| Q |
121 |
ttgatttaccatccaatatcaaacccattggatgtagatggttttatcaagttaaatatcatg |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
12286373 |
ttgatttaccatccaatatcaaacccattggatgtagatggatttataaagttaaatatcatg |
12286435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 19586018 - 19585856
Alignment:
| Q |
21 |
gagccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttg |
120 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
19586018 |
gagccaaaatcatatgctgaagcaagcaagcatgatttttggaaacaagccatgcaagttgaactgcaagctcttgagaaaactggtacctggaaacttg |
19585919 |
T |
|
| Q |
121 |
ttgatttaccatccaatatcaaacccattggatgtagatggttttatcaagttaaatatcatg |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
19585918 |
ttgatttaccatccaatatcaaacccattggatgtagatggatttataaagttaaatatcatg |
19585856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 5676444 - 5676329
Alignment:
| Q |
45 |
agcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttgttgatttaccatccaatatcaaac |
144 |
Q |
| |
|
||||||| |||| |||||| ||||| ||||||||||||||| |||||||||||| | | | || ||| ||||||| ||||||||||| || | |||| |
|
|
| T |
5676444 |
agcaagctagatttttggaagcaagcgatgcaagttgaactg-tagctcttgagaagactaggacttggaaacttgtagatttaccatcatatgtgaaac |
5676346 |
T |
|
| Q |
145 |
ccattggatgtagatgg |
161 |
Q |
| |
|
|||| ||||| |||||| |
|
|
| T |
5676345 |
ccataggatgcagatgg |
5676329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 5666905 - 5666790
Alignment:
| Q |
45 |
agcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttgttgatttaccatccaatatcaaac |
144 |
Q |
| |
|
||||||| |||| |||||| ||||| ||||||||||||||| |||||||||||| | | | || | | ||||||| ||||||||||| || | |||| |
|
|
| T |
5666905 |
agcaagctagatttttggaagcaagcgatgcaagttgaactg-tagctcttgagaaaactaggacttcgaaacttgtagatttaccatcatatgtgaaac |
5666807 |
T |
|
| Q |
145 |
ccattggatgtagatgg |
161 |
Q |
| |
|
|||| ||||| |||||| |
|
|
| T |
5666806 |
ccataggatgcagatgg |
5666790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 29500348 - 29500484
Alignment:
| Q |
24 |
ccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttgttg |
123 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
29500348 |
ccaaaatcatatgttgaggcaagcaagcatgactgttgaaaacaagccatgcaagttgaacttcaagctcttgagaaaactggtacctgagaacttgttg |
29500447 |
T |
|
| Q |
124 |
atttaccatccaatatcaaacccattggatgtagatgg |
161 |
Q |
| |
|
|||||||| | ||| |||| |||| ||| ||||||||| |
|
|
| T |
29500448 |
atttaccaccaaatgtcaagccca-tggttgtagatgg |
29500484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 27035470 - 27035421
Alignment:
| Q |
33 |
tatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttga |
82 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
27035470 |
tatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttga |
27035421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 14815777 - 14815942
Alignment:
| Q |
21 |
gagccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttg |
120 |
Q |
| |
|
||||| ||||| ||||| |||||||| || ||||| |||||||| || || |||||||||||||| |||||||||||||| | |||||| ||| |||||| |
|
|
| T |
14815777 |
gagcctaaatcctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttg |
14815876 |
T |
|
| Q |
121 |
ttgatttaccatccaatatcaaacccattggatgtagatggttttatcaagttaaatatcatgctg |
186 |
Q |
| |
|
| ||||||||| | ||| | || || ||||||||||||||| |||| |||| |||| |||||||| |
|
|
| T |
14815877 |
tggatttaccaccaaatgttaagcctattggatgtagatggatttacaaagtcaaatttcatgctg |
14815942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 10653717 - 10653861
Alignment:
| Q |
22 |
agccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttgt |
121 |
Q |
| |
|
|||| ||||| ||||| |||||||| || ||||| |||||||| || || |||||||||||||| |||||||||||||| | |||||| ||| ||||||| |
|
|
| T |
10653717 |
agcctaaatcctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgt |
10653816 |
T |
|
| Q |
122 |
tgatttaccatccaatatcaaacccattggatgtagatggtttta |
166 |
Q |
| |
|
||||||||| | ||| | || || ||||||||||||||| |||| |
|
|
| T |
10653817 |
ggatttaccaccaaatgttaagcctattggatgtagatggattta |
10653861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 5240319 - 5240481
Alignment:
| Q |
21 |
gagccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttg |
120 |
Q |
| |
|
||||| ||||| ||||| |||||||| || ||||| ||||||| || || |||||||||||||| |||||||||||||| | |||||| ||| |||||| |
|
|
| T |
5240319 |
gagcctaaatcctatgctgaagcaagtaaacatgagtgttggatgcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttg |
5240418 |
T |
|
| Q |
121 |
ttgatttaccatccaatatcaaacccattggatgtagatggttttatcaagttaaatatcatg |
183 |
Q |
| |
|
| ||||||||| | ||| | || || ||||||||||||||| |||| |||| |||| ||||| |
|
|
| T |
5240419 |
tggatttaccaccaaatgttaagcctattggatgtagatggatttacaaagtcaaatttcatg |
5240481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 23166764 - 23166599
Alignment:
| Q |
21 |
gagccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttg |
120 |
Q |
| |
|
||||||||||| ||||| || |||||||||| |||||| ||||| || || |||||||||||||| || ||||||||||| | |||||| ||| |||||| |
|
|
| T |
23166764 |
gagccaaaatcttatgctgaggcaagcaagcttgattgctggaagcatgctatgcaagttgaacttcaggctcttgagaaaactggtacttggaaacttg |
23166665 |
T |
|
| Q |
121 |
ttgatttaccatccaatatcaaacccattggatgtagatggttttatcaagttaaatatcatgctg |
186 |
Q |
| |
|
| ||||||||| | ||| | || || ||||| || |||||| ||||| | || |||| |||||||| |
|
|
| T |
23166664 |
tggatttaccaccaaatgtgaagcctattggttgcagatggatttataaggtcaaatttcatgctg |
23166599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 10867862 - 10868006
Alignment:
| Q |
22 |
agccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttgt |
121 |
Q |
| |
|
|||| ||||| ||||| |||||||| || ||||| |||||||| || || |||||||||||||| |||||||||||||| | |||||| ||| ||||||| |
|
|
| T |
10867862 |
agcctaaatcctatgctgaagcaagtaaacatgagtgttggaagcatgctatgcaagttgaacttcaagctcttgagaaaactggtacttggaaacttgt |
10867961 |
T |
|
| Q |
122 |
tgatttaccatccaatatcaaacccattggatgtagatggtttta |
166 |
Q |
| |
|
|||||||| | ||| | || || ||||||||||||||| |||| |
|
|
| T |
10867962 |
ggatttacctccaaatgttaagcctattggatgtagatggattta |
10868006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 35088183 - 35088232
Alignment:
| Q |
33 |
tatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttga |
82 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
35088183 |
tatgctgaggcaagcaagcatgaatgttggaaacaagcaatgcaagttga |
35088232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 612970 - 613115
Alignment:
| Q |
21 |
gagccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttg |
120 |
Q |
| |
|
||||| ||||| ||||| |||||||| || |||||| || ||| || || |||||||||||||| |||||||||||||| | ||| || ||| | |||| |
|
|
| T |
612970 |
gagcctaaatcctatgctgaagcaagtaaatatgatttttagaagcatgcaatgcaagttgaacttcaagctcttgagaaaactggcacttggaagcttg |
613069 |
T |
|
| Q |
121 |
ttgatttaccatccaatatcaaacccattggatgtagatggtttta |
166 |
Q |
| |
|
| ||| ||||| | ||| | || |||||||||||||||||| |||| |
|
|
| T |
613070 |
tggatataccaccaaatgttaagcccattggatgtagatggattta |
613115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 619364 - 619509
Alignment:
| Q |
21 |
gagccaaaatcatatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttg |
120 |
Q |
| |
|
||||| ||||| ||||| |||||||| || |||||| || ||| || || |||||||||||||| |||||||||||||| | ||| || ||| | |||| |
|
|
| T |
619364 |
gagcctaaatcctatgctgaagcaagtaaatatgatttttagaagcatgcaatgcaagttgaacttcaagctcttgagaaaactggcacttggaagcttg |
619463 |
T |
|
| Q |
121 |
ttgatttaccatccaatatcaaacccattggatgtagatggtttta |
166 |
Q |
| |
|
| ||| ||||| | ||| | || |||||||||||||||||| |||| |
|
|
| T |
619464 |
tggatataccaccaaatgttaagcccattggatgtagatggattta |
619509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 15886693 - 15886595
Alignment:
| Q |
33 |
tatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttgttgatttacca |
131 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| | |||||| ||| | |||||||||||||| |
|
|
| T |
15886693 |
tatgctgaggcaagcaagcatgattgctggaatcaagctatgcaagttgaactatcagctcttgagacaactggtacttggaagattgttgatttacca |
15886595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 9846257 - 9846159
Alignment:
| Q |
33 |
tatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttgttgatttacca |
131 |
Q |
| |
|
||||| |||||||| || |||||||||||| ||||||||||||| |||||| | ||||||||||| | |||||| ||| || |||||||||||||| |
|
|
| T |
9846257 |
tatgctgaagcaagtaaatatgattgttggactcaagccatgcaagctgaactaaatgctcttgagaagactggtacatggaaagttgttgatttacca |
9846159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 26466090 - 26465996
Alignment:
| Q |
31 |
catatgccgaagcaagcaagcatgattgttggaaacaagccatgcaagttgaactgcaagctcttgagaatattggtacctggcaacttgttgat |
125 |
Q |
| |
|
||||||| || |||||||| |||||||||||| ||||| ||||||||||||||| ||||||||||||| ||| |||||| |||| |||||| |
|
|
| T |
26466090 |
catatgctgaggcaagcaaatttgattgttggaagcaagctatgcaagttgaactgtctgctcttgagaatactggaacctggaaactggttgat |
26465996 |
T |
|
Back To:
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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 11925327 - 11925370
Alignment:
| Q |
42 |
gcaagcaagcatgattgttggaaacaagccatgcaagttgaact |
85 |
Q |
| |
|
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|
|
| T |
11925327 |
gcaagaaagcatgattgttggaaacaagcgatgcaagttaaact |
11925370 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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