View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2262_low_3 (Length: 540)
Name: NF2262_low_3
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 14 - 525
Target Start/End: Original strand, 2429171 - 2429683
Alignment:
| Q |
14 |
tctcaactcccc-actctatctttccctataaatcctcacatctctcaaagcacaaatatatagtgactagaaaatcatatcatatcattagaaaagaaa |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2429171 |
tctcaactcccccactctatctttccctataaatccccacaactctcaaagcacaaatatatagtgactagaaaatcatatcatatcattagaatagaaa |
2429270 |
T |
|
| Q |
113 |
agggggccactatgggtagtggtgatcagaaaaatgtttccattaatgataagaaaaagaaaaatggttctttcaagtccattttcatgcatgctgatgt |
212 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2429271 |
agggggccactatgggtggtggtgatcagaaaaatgtttccattaatgataagaaaaagaaaaatggttctttcaagtccattttcatgcatgctgatgt |
2429370 |
T |
|
| Q |
213 |
tcttgattggtttttcatggcttttggnnnnnnnggggctattggtgatggcatgatggtccctttcgtgttgtttatcacaagcaaaattatgaactct |
312 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2429371 |
tcttgattggtttttcatggcttttggtttttttggggctattggtgatggcatgatggtccctttcgtgttgtttatcacaagcaaaattatgaactct |
2429470 |
T |
|
| Q |
313 |
gttggtagtgcttctggaacatcaagcagcaattttgtccatgatgtcaataaggttctcactctctccctctctagcttaacaaacacaactttgattc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2429471 |
gttggtagtgcttctggaacatcaagcagcaattttgtccatgatgtcaataaggttctcactctctccctctctagcttaacaaacacaactttgattc |
2429570 |
T |
|
| Q |
413 |
tatctcaacagtgtggaaattcttcattcttaaactttgttggggnnnnnnnnnattaaaagttgtcgatttcaaatataaaaagtatggaacaatttgc |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
2429571 |
tatctcaacagtgtggaaattcttcattcttaaactttgttggggtatttttttattaaaagttgtcgatttcaaatataaaaagtatgtaccaatttgc |
2429670 |
T |
|
| Q |
513 |
aaattttaaattt |
525 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2429671 |
aaattttaaattt |
2429683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 124 - 350
Target Start/End: Complemental strand, 2679969 - 2679743
Alignment:
| Q |
124 |
atgggtagtggtgatcagaaaaatgtttccattaatgataagaaaaagaaaaatggttctttcaagtccattttcatgcatgctgatgttcttgattggt |
223 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| | |
|
|
| T |
2679969 |
atgggtggtggtgatcagaaaaatgtttccattaatgttaagaaaaagaaaaatggttcttttaggtccattttcatgcatgctgatgttcttgattgtt |
2679870 |
T |
|
| Q |
224 |
ttttcatggcttttggnnnnnnnggggctattggtgatggcatgatggtccctttcgtgttgtttatcacaagcaaaattatgaactctgttggtagtgc |
323 |
Q |
| |
|
|||||||||||||||| || || ||||||||||| | ||| ||||| || |||||||||||||||| ||||||||||||| |||||| | |
|
|
| T |
2679869 |
ttttcatggcttttggtttgattggtgccattggtgatggactaatgactcctttggttttgtttatcacaagcagaattatgaactctattggtactat |
2679770 |
T |
|
| Q |
324 |
ttctggaacatcaagcagcaattttgt |
350 |
Q |
| |
|
|||||| ||||||||| ||||||||| |
|
|
| T |
2679769 |
ttctggctcatcaagcaccaattttgt |
2679743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 124 - 318
Target Start/End: Original strand, 2445700 - 2445894
Alignment:
| Q |
124 |
atgggtagtggtgatcagaaaaatgtttccattaatgataagaaaaagaaaaatggttctttcaagtccattttcatgcatgctgatgttcttgattggt |
223 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |
|
|
| T |
2445700 |
atgggtggtggtgagcagaaaaatgtttctattaatgttaagaaaaagaaaaatggttcttttaagtccattttcatgcatgctgatgttctagactggt |
2445799 |
T |
|
| Q |
224 |
ttttcatggcttttggnnnnnnnggggctattggtgatggcatgatggtccctttcgtgttgtttatcacaagcaaaattatgaactctgttggt |
318 |
Q |
| |
|
|||| |||| |||||| |||||||||||||||||||| ||| ||||| | |||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
2445800 |
ttttaatggtttttggttcatttggggctattggtgatggcataatgatccctatggtgttgctaatcacaagcaaaattatgaactctattggt |
2445894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 124 - 415
Target Start/End: Complemental strand, 2603245 - 2602956
Alignment:
| Q |
124 |
atgggtagtggtgatcagaaaaatgtttccattaatgataagaaaaagaaaaatggttctttcaagtccattttcatgcatgctgatgttcttgattggt |
223 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
2603245 |
atgggtggtggtgatcagaaaaatgtttccattaatgttaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagattggt |
2603146 |
T |
|
| Q |
224 |
ttttcatggcttttggnnnnnnnggggctattggtgatggcatgatggtccctttcgtgttgtttatcacaagcaaaattatgaactctgttggtagtgc |
323 |
Q |
| |
|
||||||||| |||||| || | |||||||||||||| || ||||| |||||||||| || ||| | ||||||||||| ||||| |||| |
|
|
| T |
2603145 |
ttttcatggtttttggtttgattggttccattggtgatggcatatcagttcctttgttgttgtttattgcaggcagacttatgaactctattggtggtgc |
2603046 |
T |
|
| Q |
324 |
ttctggaacatcaagcagcaattttgtccatgatgtcaataaggttctcactctctccctctctagcttaacaaacacaactttgattctat |
415 |
Q |
| |
|
|||||| ||||||| || ||||||||| ||||| |||||||||||| | |||| || |||||| ||||||| ||||||| |||||||| |
|
|
| T |
2603045 |
ttctggcacatcaaacaacaattttgttcatgacatcaataaggttccctctctatctctctct--tttaacaagtacaacttggattctat |
2602956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 124 - 387
Target Start/End: Complemental strand, 2647526 - 2647260
Alignment:
| Q |
124 |
atgggtagtggtgatcagaaaaatgtttccattaatgataagaa---aaagaaaaatggttctttcaagtccattttcatgcatgctgatgttcttgatt |
220 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2647526 |
atgggtggtagtgatcagaaaaatgtttccattaatgttaagaagaaaaagaaaaatggttcttttaagtccattttcatgcatgctgatgttcttgatt |
2647427 |
T |
|
| Q |
221 |
ggtttttcatggcttttggnnnnnnnggggctattggtgatggcatgatggtccctttcgtgttgtttatcacaagcaaaattatgaactctgttggtag |
320 |
Q |
| |
|
| || || ||||||||||| || || ||||||||||| || ||| ||||| | ||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
2647426 |
gtttcttaatggcttttggtttgtttggagccattggtgatggaataatgactcctttgcttttgtttatctcaagcaaacttatgaactctattggtac |
2647327 |
T |
|
| Q |
321 |
tgcttctggaacatcaagcagcaattttgtccatgatgtcaataaggttctcactctctccctctct |
387 |
Q |
| |
|
| |||||| |||||||||| ||||||||||||| | || || |||||||| ||||||| |||||| |
|
|
| T |
2647326 |
tatttctggcacatcaagcaacaattttgtccataacatctatgaggttctctctctctctctctct |
2647260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 124 - 417
Target Start/End: Complemental strand, 2575229 - 2574942
Alignment:
| Q |
124 |
atgggtagtggtgatcagaaaaatgtttccattaatgataagaaaaagaaaaatggttctttcaagtccattttcatgcatgctgatgttcttgattggt |
223 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| | | ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
2575229 |
atgggtggtggtgatcagaaaaatgtttacattgttaagaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagattggt |
2575130 |
T |
|
| Q |
224 |
ttttcatggcttttggnnnnnnnggggctattggtgatggcatgatggtccctttcgtgttgtttatcacaagcaaaattatgaactctgttggtagtgc |
323 |
Q |
| |
|
||||||||| |||||| || | |||||||||||||| || ||||| |||||||||| || ||| | ||||||||||| |||||||||| |
|
|
| T |
2575129 |
ttttcatggtttttggtttgattggttccattggtgatggcatatcagttcctttgttgttgtttattgcaggcagacttatgaactctattggtagtgc |
2575030 |
T |
|
| Q |
324 |
ttctggaacatcaagcagcaattttgtccatgatgtcaataaggttctcactctctccctctctagcttaacaaacacaactttgattctatct |
417 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| ||||||||||| || ||||||| || ||||||| ||||||||| |||||||||| |
|
|
| T |
2575029 |
ttctggcgcatcaagcaacaattttgtccatgacatcaataaggttttctctctctctct------cttaacacacacaacttggattctatct |
2574942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 2615433 - 2615530
Alignment:
| Q |
142 |
aaaaatgtttccattaatgataagaaaaagaaaaatggttctttcaagtccattttcatgcatgctgatgttcttgattggtttttcatggcttttgg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2615433 |
aaaaatgtttccattaatgataagaaaaagaagaatggttctttgaagtccattttcatgcatgctgatgttcttgattggtttttcatggtttttgg |
2615530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 2425823 - 2425910
Alignment:
| Q |
100 |
attagaaaagaaaaggggg-ccactatgggtagtggtgatcagaaaaatgtttccattaatg---ataagaaaaagaaaaatggttcttt |
185 |
Q |
| |
|
||||||||||||||||||| |||| ||| || | |||| ||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
2425823 |
attagaaaagaaaaggggggccaccatg--tatggctgattagaaaaatgtttccattaatgttaagaagaaaaagaaaaatggttcttt |
2425910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University