View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2262_low_4 (Length: 489)
Name: NF2262_low_4
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_low_4 |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 39635207 - 39635666
Alignment:
| Q |
18 |
agttattaagtccatttggtcaaaattggtaaaaagattcatcttgctggtgtatactatctgaaaagatgctacctacactcatagaggactcatgaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39635207 |
agttattaagtccatttggtcaaaattggtaaaaagattcatcttgctggtgtatactatctgaaaagatgctacctacactcacagaggactcatgaaa |
39635306 |
T |
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| Q |
118 |
acgttgataacttgatgcctaagttagttaatgaaagcgtttagactactctaaagagataaatctgtagacttggattttagtaggattgtttcaacac |
217 |
Q |
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| T |
39635307 |
acgttgataacttgatgcctaagttagttaatgaaagcgtttagactactctaaagagataaatctgtagacttggattttagtagcattgtttcaacac |
39635406 |
T |
|
| Q |
218 |
aaacaacttttgagcagcttcaattttgacatactgaattaacaattgagaatcacatagctaccttgcaaacattttttaaaagaaactatctacagta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39635407 |
aaacaacttttgagcagcttcaattttgacatactgaattaacaattgagaatcacacagctaccttgcaaacattttttaaaagaaactatctacagta |
39635506 |
T |
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| Q |
318 |
aaagcccagtttctcctaattctttacagcatcatccacaaagccatgctacttgctagcttttacagcatcaagaatggaattaagcacaccaatggtc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39635507 |
aaagcccagtttctcctaattctttacagcatcatccacaaagccatgctacttgctagcttttacagcatcaagaatggaattaagcacaccaatggtc |
39635606 |
T |
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| Q |
418 |
aatggtttcacttgataatcattaatccccgcttcgataaattcttgtttttctgcttca |
477 |
Q |
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| T |
39635607 |
aatggtttcacttgataatcattaatccccgcttccataaattcttgtttttctgcttca |
39635666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 43 - 208
Target Start/End: Original strand, 23398017 - 23398178
Alignment:
| Q |
43 |
ttggtaaaaagattcatcttgctggtgtatactatctgaaaagatgctacctacactcatagaggactcatgaaaacgttgataacttgatgcctaagtt |
142 |
Q |
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||||||||| ||||||||||||| || ||||| | |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
23398017 |
ttggtaaaatgattcatcttgctagtttataccacttgaaaagatgctact----ctcatagaggactcgtggaaacgttgataacttgatgcctaagtt |
23398112 |
T |
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| Q |
143 |
agttaatgaaagcgtttagactactctaaagagataaatctgtagacttggattttagtaggattg |
208 |
Q |
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| T |
23398113 |
tgtcaatgaaaacgttgagactaccctaaagagataaatctatagacttcaattttagtaggattg |
23398178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 23348194 - 23348277
Alignment:
| Q |
125 |
taacttgatgcctaagttagttaatgaaagcgtttagactactctaaagagataaatctgtagacttggattttagtaggattg |
208 |
Q |
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| T |
23348194 |
taacttgatgcctaagttagtcaatgaaaacgttgagactacgctaaagagataaatctatagacttcaattttagtaggattg |
23348277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 262 - 408
Target Start/End: Original strand, 23348274 - 23348425
Alignment:
| Q |
262 |
attgagaatcacatagctaccttgcaaacattttttaaaagaaac----tatctacagtaaaagcccagtttctcctaattctttacagcatcatccac- |
356 |
Q |
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|||||||||||||| |||| ||||||||||||||||| |||||| |||||||| |||||| | ||||||||||| | |||||| |||||| ||| |
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| T |
23348274 |
attgagaatcacatcgctaacttgcaaacattttttagtagaaactatatatctacaataaaagtctagtttctcctacatttttacaacatcattcacg |
23348373 |
T |
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| Q |
357 |
aaagccatgctacttgctagcttttacagcatcaagaatggaattaagcaca |
408 |
Q |
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|| | |||||||||||| | ||||||| |||||||||| |||||||||||| |
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| T |
23348374 |
aaggacatgctacttgccaacttttacgacatcaagaatcgaattaagcaca |
23348425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 23398175 - 23398233
Alignment:
| Q |
262 |
attgagaatcacatagctaccttgcaaacattttttaaaagaaactatctacagtaaaa |
320 |
Q |
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|||||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||| |
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| T |
23398175 |
attgagaatcacatcgctaacttgcaaacattttttagtagaaactatctacaataaaa |
23398233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 265 - 472
Target Start/End: Complemental strand, 160755 - 160545
Alignment:
| Q |
265 |
gagaatcacatagctaccttgcaaacattttttaaaagaaactatctacagtaaaagcccagtttctcctaattctttacagcatcatccacaaa-gcca |
363 |
Q |
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||||||||||||| || || |||||||||||||| ||||||||||||||| |||| | | |||||||| || | |||||| |||||| |||||| | || |
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| T |
160755 |
gagaatcacatagataactcgcaaacattttttagaagaaactatctacaataaatgtctagtttctcttacatttttacaacatcattcacaaaggaca |
160656 |
T |
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| Q |
364 |
tgctacttgctagcttttacagcatcaagaatggaattaagcacacca--atggtcaatggtttcacttgataatcattaatccccgcttcgataaattc |
461 |
Q |
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| ||| |||| ||||||||| |||||||||| |||||||| |||||| |||||||||||||| |||||||| |||| ||||| |||| |||||||| |
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| T |
160655 |
tactatttgccagcttttacgacatcaagaatcgaattaagtacaccaatatggtcaatggttttacttgatagtcatctatcccagctttcataaattc |
160556 |
T |
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| Q |
462 |
ttgtttttctg |
472 |
Q |
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| T |
160555 |
ttgtttttctg |
160545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 43 - 206
Target Start/End: Complemental strand, 160916 - 160757
Alignment:
| Q |
43 |
ttggtaaaaagattcatcttgctggtgtatactatctgaaaagatgctacctacactcatagaggactcatgaaaacgttgataacttgatgcctaagtt |
142 |
Q |
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|||||||||||||||||||||| || ||||||| | | ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
160916 |
ttggtaaaaagattcatcttgcaagtttatactacccggaaagatgctac----actcatagaggactcgaggaaacgttgataacttgatgcctaagtt |
160821 |
T |
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| Q |
143 |
agttaatgaaagcgtttagactactctaaagagataaatctgtagacttggattttagtaggat |
206 |
Q |
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|| ||||||| ||| |||| || |||||||||||||||| | |||| ||||||||||||| |
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| T |
160820 |
ggtcaatgaaaacgtcgagacaaccctaaagagataaatctattaacttcaattttagtaggat |
160757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 420
Target Start/End: Complemental strand, 26570561 - 26570507
Alignment:
| Q |
366 |
ctacttgctagcttttacagcatcaagaatggaattaagcacaccaatggtcaat |
420 |
Q |
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||||||||||||| ||||| |||||||||||||| ||| ||||| |||| ||||| |
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| T |
26570561 |
ctacttgctagctcttacaacatcaagaatggaactaatcacactaatgttcaat |
26570507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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