View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2262_low_7 (Length: 424)
Name: NF2262_low_7
Description: NF2262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2262_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 169 - 410
Target Start/End: Original strand, 35969007 - 35969233
Alignment:
| Q |
169 |
aatctcattgacctattagtgtgttagtctttttatgagaatctctttcgnnnnnnntagtgaactagacctttcaacaggatttcatgccttgttggag |
268 |
Q |
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| T |
35969007 |
aatctcattgacctattagtgtgtcagtctttttatgagaacctctttcgaaaaaaatagtgaactagacctttcaacaggatttcatgccttgttggag |
35969106 |
T |
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| Q |
269 |
tttcgaaacgcctagatcagcccttaaaatttcagaccttaaaatttcagacctatcaattttaaagtaggccggactttggccttgcaatacctagctt |
368 |
Q |
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| T |
35969107 |
tttcgagacgcctagatcagc---------------ccttaaaatttcagacctatcatctttaaagtaggccggactcaggccttgcaatacctagctt |
35969191 |
T |
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| Q |
369 |
agactaacatattatcaccccctaacaatgtcctggttcatc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
35969192 |
agactaacatattatcaccccctaacaatgtcctggttcatc |
35969233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 35968823 - 35968929
Alignment:
| Q |
18 |
gttattgacgcgaaatcattcgaaagccctatatttttcaacactaaaaaagaggaagagcaggtaagatcagcccttgtaatttcttatgtgattctaa |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35968823 |
gttattgatgcgaaatcattcgaaagccctatatttttcaacactaaaaaagaggaagagcaggtaagatcagcccttgtaatttcttatgtgattctaa |
35968922 |
T |
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| Q |
118 |
attaaca |
124 |
Q |
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| T |
35968923 |
attaaca |
35968929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 389
Target Start/End: Original strand, 35979269 - 35979343
Alignment:
| Q |
315 |
tcagacctatcaattttaaagtaggccggactttggccttgcaatacctagcttagactaacatattatcacccc |
389 |
Q |
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| T |
35979269 |
tcagacctaacatttttaaagtaggccggacttaggcgttacaaaacctaacttagactagcatattctcacccc |
35979343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 35956217 - 35956280
Alignment:
| Q |
18 |
gttattgacgcgaaatcattcgaaagccctatatttttcaacactaaaaaagaggaagagcagg |
81 |
Q |
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|||||||| | ||||||||| |||||||| | || ||||||||||| |||||||| |||||||| |
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| T |
35956217 |
gttattgatgggaaatcatttgaaagcccaacatctttcaacactataaaagaggcagagcagg |
35956280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 35979119 - 35979153
Alignment:
| Q |
169 |
aatctcattgacctattagtgtgttagtcttttta |
203 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
35979119 |
aatctctttgacctattagtgtgttagtcttttta |
35979153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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