View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2263_low_1 (Length: 439)
Name: NF2263_low_1
Description: NF2263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2263_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 36733690 - 36734113
Alignment:
| Q |
1 |
attggttcaatacctcaccaaggacttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttcca |
100 |
Q |
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| T |
36733690 |
attggttcaatacctcaccaaggacttcacaaactttcaacaaaatatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttcca |
36733789 |
T |
|
| Q |
101 |
caccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtcctcaaagttcagctgttgattatctaacatatggctcacaaga |
200 |
Q |
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| T |
36733790 |
caccagaatccgctaaagagtttcttaaaactcacgaaacctatttctccaaccgtcctcaaagttcagctgttgattatctaacatatggctcacaaga |
36733889 |
T |
|
| Q |
201 |
tttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtctgaacttcttggtggtaacacattgagtcaacttcttccttta |
300 |
Q |
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| T |
36733890 |
tttttcctttgctccatatggaccttattggaaatttatcaagaaaatatgcatgtctgaacttcttggtggtaacacattgagtcaacttcttccttta |
36733989 |
T |
|
| Q |
301 |
aggagacaagagacaacaaggtttgttagttttttgctcaagaaagggaaggagaatgaggttattgatgttggaagagagcttttgaagttgtcgaata |
400 |
Q |
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| T |
36733990 |
aggagacaagagacaacaaggtttgttagttttttgctcaagaaagggaaggagaatgaggttattgatgttggaagagagcttttgaagttgtcgaata |
36734089 |
T |
|
| Q |
401 |
acgttatttcgaggatgattatga |
424 |
Q |
| |
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| T |
36734090 |
acgttatttcaaggatgattatga |
36734113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 25168110 - 25168224
Alignment:
| Q |
26 |
ttcataaactttcaacaaaatatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttct |
125 |
Q |
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||||||| ||||||| |||||||||| ||||| || ||||||||||| || || |||||| | ||| |||| | |||||| || ||||||||||| |
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| T |
25168110 |
ttcataagctttcaattcaatatggacccataattcaacttttcctaggctctataccttgtatagtaacttcaaatccagaaatagccaaagagtttct |
25168209 |
T |
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| Q |
126 |
taaaactcacgaaac |
140 |
Q |
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| T |
25168210 |
taaaactcacgaaac |
25168224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 155
Target Start/End: Original strand, 24939511 - 24939620
Alignment:
| Q |
46 |
tatggacctataatacaccttttcctaggttccatgccttgtgttgtagcttccacaccagaatccgctaaagagtttcttaaaactcacgaaacctatt |
145 |
Q |
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|||||||| ||||| || ||||||||||| ||| | |||||| | ||| |||| | ||| || || |||||||||||||||||||||||||| | | |
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| T |
24939511 |
tatggacccataatgcaacttttcctaggctccgttccttgtatagtaacttcaagtccaaaaatagccaaagagtttcttaaaactcacgaaacttcct |
24939610 |
T |
|
| Q |
146 |
tctccaaccg |
155 |
Q |
| |
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|||||||||| |
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| T |
24939611 |
tctccaaccg |
24939620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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