View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2263_low_2 (Length: 359)
Name: NF2263_low_2
Description: NF2263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2263_low_2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 7323636 - 7323294
Alignment:
| Q |
17 |
agtctatttgaattattaataatatactacatgtgttttgtgtgatttgaaattgaaacttgtggagtattattgttaaaattttgatcgcaatgtcatt |
116 |
Q |
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| T |
7323636 |
agtctatttgaattattaataatatactacatgtgttttgtgtgatttgaaattgaaacttgtggagtattattgttaaaattttgattgcaatgtcatt |
7323537 |
T |
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| Q |
117 |
tgacagaaatataggattcatttgaaaagatcggctgatgaaacaaaacgtgggaggacaaaatcaaagtggagtgatagctttcaagccgagtggatcg |
216 |
Q |
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| T |
7323536 |
tgacagaaatataggattcatttgaaaagatcggctgatgaaacaaaacgtgggaggacaaaatcaaagtggagtgatagctttcaagccgagtggatcg |
7323437 |
T |
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| Q |
217 |
acaaggttcatagttatgactttcaaactaagtcgatcgatcaagaccggaatgataacctaattcaacctgagctggctgatcaagaccggaatgacga |
316 |
Q |
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| T |
7323436 |
acaaggttcatagttatgactttcaaactaagtcgatcgatcaagaccggaatgataacctaattcaaactgagctggctgatcaagaccggaatgacga |
7323337 |
T |
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| Q |
317 |
ctttctagctgagtggattgactgtgggacgggatcctacctt |
359 |
Q |
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| T |
7323336 |
ctttctagctgagtggattgactgcgggacgggatcctacctt |
7323294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 7244696 - 7244875
Alignment:
| Q |
27 |
aattattaataatatactacatgtgttttgtgtgatttgaaattgaaacttgtggagtattattgttaaaattttgatcgcaatgtcatttgacagaaat |
126 |
Q |
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| T |
7244696 |
aattattaataatatactgcatgtattttgattgattttaaattgaaactt-------actattgataaaattgtgattgcaatgtcgtttg-cagaaat |
7244787 |
T |
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| Q |
127 |
ataggattcatttgaaaagatcggctgatgaaacaaaacgtgggaggacaaaatcaaagtggagtgatagctttcaagccgagtggat |
214 |
Q |
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| T |
7244788 |
ataggattcatttgaagagatcagctgatgaaacaaaacctgggaagaaaaaaacaaagtggagtgatagctctcaagctgaatggat |
7244875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 7244876 - 7244939
Alignment:
| Q |
296 |
tgatcaagaccggaatgacgactttctagctgagtggattgactgtgggacgggatcctacctt |
359 |
Q |
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| T |
7244876 |
tgatcaaaatcggaacgatgactttctagctaaatggattgactgtggggcgggatcctacctt |
7244939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 8163287 - 8163347
Alignment:
| Q |
35 |
ataatatactacatgtgttttgtgtgatttgaaattgaaacttgtggagtattattgttaa |
95 |
Q |
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| T |
8163287 |
ataatatactacttgcgttttgtgtgattttaaactgaaatttatggagtattattattaa |
8163347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 31771937 - 31772105
Alignment:
| Q |
17 |
agtctatttgaattattaataatatactacatgtgttttgtgtgatttgaaattgaaacttgtggagtattattgttaaaattttgatcgcaatgtcatt |
116 |
Q |
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|||||| || |||||||||||||||| |||||||||||||||| |||| ||||| ||||| || | |||||||||||||||| |||| |||||||| || |
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| T |
31771937 |
agtctaattaaattattaataatatattacatgtgttttgtgttattttaaattaaaacta-tgaaatattattgttaaaattgtgattgcaatgtcgtt |
31772035 |
T |
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| Q |
117 |
tgacagaaatataggattcatttgaaaagatcggctgatgaaacaaaacgtgggaggacaaaatcaaagt |
186 |
Q |
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| T |
31772036 |
tgacaaaagcataggactcgtttgaagagattgactgatgaaatataacatgggaggaaaaaatcaaagt |
31772105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 31776579 - 31776613
Alignment:
| Q |
27 |
aattattaataatatactacatgtgttttgtgtga |
61 |
Q |
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| T |
31776579 |
aattattaataatatactacatgtcttttgtgtga |
31776613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 31772251 - 31772292
Alignment:
| Q |
315 |
gactttctagctgagtggattgactgtgggacgggatcctac |
356 |
Q |
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| T |
31772251 |
gactttctagctgagtgaattgactgagggacgagatcctac |
31772292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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