View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2263_low_3 (Length: 283)
Name: NF2263_low_3
Description: NF2263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2263_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 4498140 - 4498392
Alignment:
| Q |
12 |
atgaaaacactggcgggtgaagatgatttctttgccaaccctttaaaatatttctatggttttggctttaactataacaattacaaagaaagtcttgtcc |
111 |
Q |
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| T |
4498140 |
atgaaaacactggcgggtgaagatgatttctttgccaaccctttaaaatatttctatggttttggctttaactataacaattacaaagaaagtcttgtcc |
4498239 |
T |
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| Q |
112 |
ttgttccaaaaggagatgagttggagtatagagacaacttgatacttgtgagaatgattaatctttcaagtaataatctttttagaactattccacctca |
211 |
Q |
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| T |
4498240 |
ttgttccaaaaggagatgagttggagtatagagacaatttgatacttgtgagaatgattgatctttcaagtaataatctttttagaactattccacctca |
4498339 |
T |
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| Q |
212 |
aattttgaagctatctgcgctttggtttttgaacttgtctcgaaacagtcttt |
264 |
Q |
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| T |
4498340 |
aatttcgaagctatctgcacttcggtttttgaacttgtctcgaaaccgtcttt |
4498392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 4329771 - 4329519
Alignment:
| Q |
12 |
atgaaaacactggcgggtgaagatgatttctttgccaaccctttaaaatatttctatggttttggctttaactataacaattacaaagaaagtcttgtcc |
111 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4329771 |
atgaaaacaatggctggtgaagatgatttctttgccaaccctttaaaatataactatggttttggctttaactataacaattacaaagaaagtcttgtcc |
4329672 |
T |
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| Q |
112 |
ttgttccaaaaggagatgagttggagtatagagacaacttgatacttgtgagaatgattaatctttcaagtaataatctttttagaactattccacctca |
211 |
Q |
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| T |
4329671 |
tggttccaaaaggagatgagttggagtatagagacaacttgatacttgtgagaatgattgatctttcaagtaataatctttttggaactattcctcctca |
4329572 |
T |
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| Q |
212 |
aattttgaagctatctgcgctttggtttttgaacttgtctcgaaacagtcttt |
264 |
Q |
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|||| ||||||||| |||||| |||||||||||||||||| ||||||||||| |
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| T |
4329571 |
aattgcgaagctatccgcgcttcggtttttgaacttgtctcaaaacagtcttt |
4329519 |
T |
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