View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2264_high_1 (Length: 519)
Name: NF2264_high_1
Description: NF2264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2264_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 2081793 - 2082282
Alignment:
| Q |
1 |
atgcatgatcaaatcatgctccattgagaaagtatgaataaactcaagtactcaacccatgatattataatgtcaatgtattacgccttacgcccttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2081793 |
atgcatgatcaaatcatgctccattgagaaagtatgaataaactcaagtactcaacccatgatattataatgtcaatgtattacgccttacgcccttgag |
2081892 |
T |
|
| Q |
101 |
ctcttatctacttttatgttgtaataagacaacatgccaccttaaacttgtaaagttattttatttatttctcaattctccaaactgactaacatttttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2081893 |
ctcttatctacttttatgttgtaataagacaacatgccaccttaaacttgtaaagttattttatttatttctcaattctccaaactgactaacatttttc |
2081992 |
T |
|
| Q |
201 |
tcnnnnnnnnnnnnnnnnnggaagaaacgagtgaccttactcttctgggcacgacggatctgaattggctatggaaccttctactacttcaataggcgga |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2081993 |
tcaaaaaa-----------ggaagaaacgagtgaccttactcttctgggcacgacggatctgaattggctatggaaccttctactacttcaataggcgga |
2082081 |
T |
|
| Q |
301 |
agtattgcatgcattccacgtgccattatggttttagcagttccacgccttcctgatatagcaatccctccaatcctagggtcagtagccccaagtaaaa |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2082082 |
agtattgcgtgcattccacgtgccattatggttttagcagttccacgccttcctgatatagcaatccctccaatcctagggtcagtagccccaagtaaaa |
2082181 |
T |
|
| Q |
401 |
gagcagttttaatagcatcctgcattacaacaacaatttgcaaaattcatcctttaatttaatagaagcc-aaaaaatcaactcacattcgcataattaa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2082182 |
gagcagttttaatagcatcctgcattacaacaacaatttgcaaaattcatcctttaatttaatagaagccaaaaaaatcaactcacattcgcataattaa |
2082281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University