View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2264_high_10 (Length: 318)

Name: NF2264_high_10
Description: NF2264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2264_high_10
NF2264_high_10
[»] chr7 (1 HSPs)
chr7 (13-318)||(33694735-33695042)


Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 33694735 - 33695042
Alignment:
Q  13 atgtgtttcatacaagtccaattcatacatctaaatcatggtactgtggtccatttca----cccatccataatgttgattgatttcttttttcggacaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  33694735 atgtgtttcatacaagtccaattcatacatctaaatcatggtactgtggtccatttcattcacccatccataatgttgattgatttcttttttcggacaa 33694834  T
Q  109 tcaaccgtgtattttacctaaataattgaagggaaaactattagaagacggcattaattttcctctctagttaatgagattaatgaatataattttgata 208  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  33694835 tcaaccgtgtattttacctacataattgaagggaaaactattataagacggcattaattttcctctctagttaatgagattaatga--ataattttgata 33694932  T
Q  209 aggttataaatgttgacaagaggcaaagatccaacctctgtcacttgtttaaggattcaaaattcttcttatttgacaaattcattgctggttaaacttt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33694933 aggttataaatgttgacaagaggcaaagatccaacctctgtcacttgtttaaggattcaaaactcttcttatttgacaaattcattgctggttaaacttt 33695032  T
Q  309 aattataatg 318  Q
    ||||||||||    
T  33695033 aattataatg 33695042  T

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